Sequence Similarity Clusters for the Entities in PDB 1LDK

Entity #1 | Chains: A
CULLIN HOMOLOG protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49420
95 % 1 1 35965
90 % 1 1 34438
70 % 1 1 30778
50 % 1 1 26425
40 % 1 1 23377
30 % 1 1 19884
Entity #2 | Chains: B
CULLIN HOMOLOG protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50131
95 % 3 3 9422
90 % 3 3 9318
70 % 3 3 8876
50 % 3 3 8081
40 % 3 3 7413
30 % 5 5 4754
Entity #3 | Chains: C
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 9 2821
95 % 9 12 2976
90 % 9 12 3019
70 % 9 12 2996
50 % 9 12 2925
40 % 9 12 2850
30 % 9 21 1849
Entity #4 | Chains: D
CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14504
95 % 10 10 4721
90 % 10 10 4741
70 % 17 17 1967
50 % 33 33 701
40 % 33 33 743
30 % 33 33 739
Entity #5 | Chains: E
SKP2-like protein type gamma protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68860
95 % 1 1 47888
90 % 1 1 45562
70 % 1 1 40144
50 % 1 1 34381
40 % 1 1 30300
30 % 1 1 25619

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.