Sequence Similarity Clusters for the Entities in PDB 1LDK

Entity #1 | Chains: A
CULLIN HOMOLOG protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48833
95 % 1 1 35553
90 % 1 1 34049
70 % 1 1 30429
50 % 1 1 26133
40 % 1 1 23122
30 % 1 1 19676
Entity #2 | Chains: B
CULLIN HOMOLOG protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49542
95 % 3 3 9321
90 % 3 3 9214
70 % 3 3 8767
50 % 3 3 7985
40 % 3 3 7346
30 % 5 5 4711
Entity #3 | Chains: C
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 9 2776
95 % 9 12 2935
90 % 9 12 2978
70 % 9 12 2956
50 % 9 12 2884
40 % 9 12 2812
30 % 9 21 1820
Entity #4 | Chains: D
CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14317
95 % 10 10 4660
90 % 10 10 4681
70 % 17 17 1935
50 % 33 33 687
40 % 33 33 729
30 % 33 33 732
Entity #5 | Chains: E
SKP2-like protein type gamma protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68163
95 % 1 1 47423
90 % 1 1 45133
70 % 1 1 39794
50 % 1 1 34090
40 % 1 1 30039
30 % 1 1 25405

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.