Sequence Similarity Clusters for the Entities in PDB 1LDK

Entity #1 | Chains: A
CULLIN HOMOLOG protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50578
95 % 1 1 36830
90 % 1 1 35249
70 % 1 1 31470
50 % 1 1 27017
40 % 1 1 23902
30 % 1 1 20350
Entity #2 | Chains: B
CULLIN HOMOLOG protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51294
95 % 3 3 9629
90 % 3 3 9515
70 % 3 3 9057
50 % 3 3 8242
40 % 3 3 7558
30 % 5 5 4845
Entity #3 | Chains: C
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 9 2879
95 % 9 12 3040
90 % 9 12 3082
70 % 9 12 3056
50 % 9 12 2982
40 % 9 12 2914
30 % 9 21 1887
Entity #4 | Chains: D
CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14833
95 % 11 11 4542
90 % 11 11 4555
70 % 18 18 1941
50 % 34 34 723
40 % 34 34 758
30 % 34 34 750
Entity #5 | Chains: E
SKP2-like protein type gamma protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70285
95 % 1 1 48882
90 % 1 1 46472
70 % 1 1 40889
50 % 1 1 35012
40 % 1 1 30860
30 % 1 1 26118

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.