Sequence Similarity Clusters for the Entities in PDB 1LDK

Entity #1 | Chains: A
CULLIN HOMOLOG protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54400
95 % 1 1 39583
90 % 1 1 37791
70 % 1 1 33566
50 % 1 1 28705
40 % 1 1 25374
30 % 1 1 21598
Entity #2 | Chains: B
CULLIN HOMOLOG protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55159
95 % 3 3 10432 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.6
PDBFlex
90 % 3 3 10306
70 % 3 3 9786
50 % 3 3 8870
40 % 3 3 8131
30 % 5 5 5225
Entity #3 | Chains: C
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3157
95 % 9 13 3060 Flexibility: Medium
Max RMSD: 12.3, Avg RMSD: 4.7
PDBFlex
90 % 9 13 3105
70 % 9 13 3070
50 % 9 13 3023
40 % 9 13 2971
30 % 9 22 1966
Entity #4 | Chains: D
CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16114
95 % 11 11 4976 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 11 11 4995
70 % 21 21 1721
50 % 37 38 725
40 % 37 38 757
30 % 37 38 756
Entity #5 | Chains: E
SKP2-like protein type gamma protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75175
95 % 1 1 52256
90 % 1 1 49547
70 % 1 1 43365
50 % 1 1 36970
40 % 1 1 32550
30 % 1 1 27538

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures