Sequence Similarity Clusters for the Entities in PDB 1LDK

Entity #1 | Chains: A
CULLIN HOMOLOG protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52562
95 % 1 1 38289
90 % 1 1 36594
70 % 1 1 32564
50 % 1 1 27882
40 % 1 1 24660
30 % 1 1 20991
Entity #2 | Chains: B
CULLIN HOMOLOG protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53296
95 % 3 3 10066
90 % 3 3 9953
70 % 3 3 9472
50 % 3 3 8592
40 % 3 3 7873
30 % 5 5 5054
Entity #3 | Chains: C
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 9 3006
95 % 9 13 2926
90 % 9 13 2971
70 % 9 13 2948
50 % 9 13 2910
40 % 9 13 2869
30 % 9 22 1896
Entity #4 | Chains: D
CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 15482
95 % 11 11 4750
90 % 11 11 4765
70 % 19 19 1942
50 % 35 35 755
40 % 35 35 787
30 % 35 35 781
Entity #5 | Chains: E
SKP2-like protein type gamma protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72780
95 % 1 1 50674
90 % 1 1 48116
70 % 1 1 42217
50 % 1 1 36044
40 % 1 1 31745
30 % 1 1 26857

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.