Sequence Similarity Clusters for the Entities in PDB 1LDK

Entity #1 | Chains: A
CULLIN HOMOLOG protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50982
95 % 1 1 37117
90 % 1 1 35520
70 % 1 1 31679
50 % 1 1 27165
40 % 1 1 24029
30 % 1 1 20445
Entity #2 | Chains: B
CULLIN HOMOLOG protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51698
95 % 3 3 9738
90 % 3 3 9619
70 % 3 3 9142
50 % 3 3 8309
40 % 3 3 7615
30 % 5 5 4895
Entity #3 | Chains: C
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 9 2910
95 % 9 12 3064
90 % 9 12 3105
70 % 9 12 3077
50 % 9 12 3004
40 % 9 12 2935
30 % 9 21 1901
Entity #4 | Chains: D
CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14973
95 % 11 11 4578
90 % 11 11 4590
70 % 18 18 1960
50 % 34 34 729
40 % 34 34 763
30 % 34 34 754
Entity #5 | Chains: E
SKP2-like protein type gamma protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70761
95 % 1 1 49206
90 % 1 1 46773
70 % 1 1 41127
50 % 1 1 35195
40 % 1 1 31013
30 % 1 1 26231

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.