Sequence Similarity Clusters for the Entities in PDB 1LDK

Entity #1 | Chains: A
CULLIN HOMOLOG protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55104
95 % 1 1 40095
90 % 1 1 38265
70 % 1 1 33973
50 % 1 1 29038
40 % 1 1 25674
30 % 1 1 21853
Entity #2 | Chains: B
CULLIN HOMOLOG protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55878
95 % 3 3 10608 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.6
PDBFlex
90 % 3 3 10481
70 % 3 3 9944
50 % 3 3 9007
40 % 3 3 8248
30 % 5 5 5308
Entity #3 | Chains: C
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3193
95 % 9 13 3099 Flexibility: Medium
Max RMSD: 12.3, Avg RMSD: 4.7
PDBFlex
90 % 9 13 3144
70 % 9 13 3102
50 % 9 13 3060
40 % 9 13 3005
30 % 9 22 1993
Entity #4 | Chains: D
CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16389
95 % 11 11 5052 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 11 11 5075
70 % 21 21 1751
50 % 37 38 733
40 % 37 38 765
30 % 37 38 764
Entity #5 | Chains: E
SKP2-like protein type gamma protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76112
95 % 1 1 52898
90 % 1 1 50134
70 % 1 1 43863
50 % 1 1 37389
40 % 1 1 32923
30 % 1 1 27856

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures