Sequence Similarity Clusters for the Entities in PDB 1LDK

Entity #1 | Chains: A
CULLIN HOMOLOG protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53304
95 % 1 1 38833
90 % 1 1 37108
70 % 1 1 32993
50 % 1 1 28236
40 % 1 1 24970
30 % 1 1 21265
Entity #2 | Chains: B
CULLIN HOMOLOG protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54051
95 % 3 3 10218 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.6
PDBFlex
90 % 3 3 10095
70 % 3 3 9589
50 % 3 3 8696
40 % 3 3 7972
30 % 5 5 5124
Entity #3 | Chains: C
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3067
95 % 9 13 2978 Flexibility: Medium
Max RMSD: 12.3, Avg RMSD: 4.7
PDBFlex
90 % 9 13 3025
70 % 9 13 2992
50 % 9 13 2950
40 % 9 13 2909
30 % 9 22 1916
Entity #4 | Chains: D
CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15731
95 % 11 11 4849 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 11 11 4868
70 % 19 19 1967
50 % 35 35 765
40 % 35 35 798
30 % 35 35 789
Entity #5 | Chains: E
SKP2-like protein type gamma protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73807
95 % 1 1 51399
90 % 1 1 48780
70 % 1 1 42725
50 % 1 1 36447
40 % 1 1 32102
30 % 1 1 27171

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.