Sequence Similarity Clusters for the Entities in PDB 1LDJ

Entity #1 | Chains: A
Cullin homolog 1 protein, length: 760 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29702
95 % 1 2 24568 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.8
PDBFlex
90 % 1 2 23766
70 % 1 2 21719
50 % 1 2 18864
40 % 1 2 16820
30 % 1 7 5372
Entity #2 | Chains: B
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 2958
95 % 4 13 2886 Flexibility: Medium
Max RMSD: 12.3, Avg RMSD: 5.1
PDBFlex
90 % 4 13 2931
70 % 4 13 2905
50 % 4 13 2869
40 % 4 13 2828
30 % 4 22 1860

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.