Sequence Similarity Clusters for the Entities in PDB 1LDJ

Entity #1 | Chains: A
Cullin homolog 1 protein, length: 760 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39604
95 % 1 2 33436 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.8
PDBFlex
90 % 1 2 31988
70 % 1 2 28586
50 % 1 2 24458
40 % 1 2 21508
30 % 1 7 5951
Entity #2 | Chains: B
ring-box protein 1 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 3618
95 % 4 13 3105 Flexibility: Medium
Max RMSD: 12.3, Avg RMSD: 4.7
PDBFlex
90 % 4 13 3160
70 % 4 13 3100
50 % 4 13 3056
40 % 4 22 2063
30 % 4 22 1947

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures