Sequence Similarity Clusters for the Entities in PDB 1LDC

Entity #1 | Chains: A,B
L-LACTATE DEHYDROGENASE protein, length: 511 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17126
95 % 5 9 3425 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 5 9 3476
70 % 5 9 3440
50 % 5 9 3343
40 % 5 9 3245
30 % 5 9 3051

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures