Sequence Similarity Clusters for the Entities in PDB 1LDB

Entity #1 | Chains: A,B,C,D
APO-L-LACTATE DEHYDROGENASE protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 3275
95 % 3 3 4035 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 3 3 4073
70 % 3 3 4015
50 % 21 22 600
40 % 157 160 69
30 % 218 221 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.