Sequence Similarity Clusters for the Entities in PDB 1LD9

Entity #1 | Chains: A,D
MHC CLASS I H-2LD HEAVY CHAIN protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27864
95 % 1 2 23301 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 24 70 266
70 % 427 736 6
50 % 436 750 6
40 % 458 792 10
30 % 496 923 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 136 98
95 % 92 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 92 234 66
70 % 514 940 4
50 % 526 962 3
40 % 526 962 7
30 % 526 962 12
Entity #3 | Chains: C,F
NANO-PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures