Sequence Similarity Clusters for the Entities in PDB 1LD9

Entity #1 | Chains: A,D
MHC CLASS I H-2LD HEAVY CHAIN protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25224
95 % 1 2 21121
90 % 17 52 347
70 % 389 656 7
50 % 390 661 7
40 % 417 709 11
30 % 450 826 14
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 131 93
95 % 84 212 65
90 % 84 212 70
70 % 475 856 5
50 % 485 876 4
40 % 485 876 9
30 % 485 876 13
Entity #3 | Chains: C,F
NANO-PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.