Sequence Similarity Clusters for the Entities in PDB 1LD9

Entity #1 | Chains: A,D
MHC CLASS I H-2LD HEAVY CHAIN protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27497
95 % 1 2 24112 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 24 70 266
70 % 435 746 6
50 % 444 760 7
40 % 468 812 9
30 % 509 939 13
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 74 189 81
95 % 92 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 92 234 66
70 % 525 953 4
50 % 537 975 3
40 % 537 975 6
30 % 537 975 9
Entity #3 | Chains: C,F
NANO-PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures