Sequence Similarity Clusters for the Entities in PDB 1LD9

Entity #1 | Chains: A,D
MHC CLASS I H-2LD HEAVY CHAIN protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27258
95 % 1 2 22824 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 24 69 265
70 % 421 727 6
50 % 422 732 6
40 % 452 783 10
30 % 490 907 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 135 96
95 % 92 228 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 92 228 67
70 % 507 922 4
50 % 519 944 3
40 % 519 944 7
30 % 519 944 12
Entity #3 | Chains: C,F
NANO-PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures