Sequence Similarity Clusters for the Entities in PDB 1LD9

Entity #1 | Chains: A,D
MHC CLASS I H-2LD HEAVY CHAIN protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 26500
95 % 1 2 22209
90 % 19 61 276
70 % 403 692 6
50 % 404 697 6
40 % 434 748 10
30 % 469 868 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 133 95
95 % 87 217 64
90 % 87 217 68
70 % 489 885 4
50 % 501 907 3
40 % 501 907 9
30 % 501 907 14
Entity #3 | Chains: C,F
NANO-PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.