Sequence Similarity Clusters for the Entities in PDB 1LD8

Entity #1 | Chains: A
protein farnesyltransferase alpha subunit protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 14 4045
95 % 6 14 4849 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 6 56 413
70 % 6 56 451
50 % 6 56 513
40 % 6 56 552
30 % 6 56 548
Entity #2 | Chains: B
protein farnesyltransferase beta subunit protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 11 5835
95 % 6 56 934 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 6 56 965
70 % 6 56 999
50 % 6 56 1044
40 % 6 56 1063
30 % 6 56 1050

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures