Sequence Similarity Clusters for the Entities in PDB 1LD7

Entity #1 | Chains: A
protein farnesyltransferase alpha subunit protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 14 4612
95 % 11 14 4916 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 16 56 418
70 % 16 56 460
50 % 16 56 516
40 % 16 56 562
30 % 16 56 564
Entity #2 | Chains: B
protein farnesyltransferase beta subunit protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 5303
95 % 16 56 963 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 16 56 990
70 % 16 56 1025
50 % 16 56 1072
40 % 16 56 1081
30 % 16 56 1080

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures