Sequence Similarity Clusters for the Entities in PDB 1LD7

Entity #1 | Chains: A
protein farnesyltransferase alpha subunit protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 14 3874
95 % 11 14 4653 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 16 56 380
70 % 16 56 415
50 % 16 56 496
40 % 16 56 534
30 % 16 56 531
Entity #2 | Chains: B
protein farnesyltransferase beta subunit protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 5612
95 % 16 56 895
90 % 16 56 932
70 % 16 56 964
50 % 16 56 1012
40 % 16 56 1033
30 % 16 56 1012

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.