Sequence Similarity Clusters for the Entities in PDB 1LD7

Entity #1 | Chains: A
protein farnesyltransferase alpha subunit protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 14 3982
95 % 11 14 4772 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 16 56 395
70 % 16 56 434
50 % 16 56 508
40 % 16 56 549
30 % 16 56 543
Entity #2 | Chains: B
protein farnesyltransferase beta subunit protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 5739
95 % 16 56 924
90 % 16 56 956
70 % 16 56 986
50 % 16 56 1036
40 % 16 56 1051
30 % 16 56 1034

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures