Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8777
95 % 2 2 9069
90 % 2 2 8982
70 % 2 2 8624
50 % 3 3 5294
40 % 3 3 4982
30 % 3 3 4515
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 5532
95 % 4 4 6171
90 % 4 4 6166
70 % 4 4 6009
50 % 4 4 5625
40 % 17 17 1727
30 % 25 25 1177
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 7968
95 % 2 2 8431
90 % 2 2 8371
70 % 2 2 8047
50 % 10 10 2071
40 % 10 10 2074
30 % 10 10 2001

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.