Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8354
95 % 2 2 8631
90 % 2 2 8554
70 % 2 2 8216
50 % 3 3 5038
40 % 3 3 4752
30 % 3 3 4309
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 5221
95 % 4 4 5844
90 % 4 4 5839
70 % 4 4 5701
50 % 4 4 5361
40 % 11 11 2560
30 % 11 11 2401
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 7574
95 % 2 2 8007
90 % 2 2 7955
70 % 2 2 7648
50 % 10 10 1984
40 % 10 10 1994
30 % 10 10 1916

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.