Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 7268
95 % 3 3 6471
90 % 3 3 6445
70 % 3 3 6284
50 % 4 4 4073
40 % 4 4 3866
30 % 4 4 3565
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 4560
95 % 4 4 5166
90 % 4 4 5172
70 % 4 4 5070
50 % 4 4 4787
40 % 10 10 2469
30 % 10 10 2314
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 6592
95 % 2 2 7055
90 % 2 2 7015
70 % 2 2 6769
50 % 10 10 1749
40 % 10 10 1775
30 % 10 10 1686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.