Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 7763
95 % 3 3 6845
90 % 3 3 6817
70 % 3 3 6643
50 % 4 4 4309
40 % 4 4 4096
30 % 4 4 3767
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 4874
95 % 4 4 5475
90 % 4 4 5477
70 % 4 4 5363
50 % 4 4 5052
40 % 10 10 2617
30 % 10 10 2452
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 7028
95 % 2 2 7486
90 % 2 2 7450
70 % 2 2 7173
50 % 10 10 1855
40 % 10 10 1874
30 % 10 10 1801

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.