Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9740
95 % 2 2 9680
90 % 2 2 9544
70 % 2 2 9159
50 % 5 5 3345
40 % 5 5 3231
30 % 5 5 2979
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 5894
95 % 4 4 6180
90 % 4 4 6178
70 % 4 4 6027
50 % 4 4 5660
40 % 4 4 5282
30 % 4 4 4705
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10024
95 % 2 2 9679
90 % 2 2 9543
70 % 2 2 9158
50 % 16 16 1256
40 % 16 16 1232
30 % 16 16 1230

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures