Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8643
95 % 2 2 8939
90 % 2 2 8863
70 % 2 2 8517
50 % 3 3 5213
40 % 3 3 4900
30 % 3 3 4445
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 5430
95 % 4 4 6071
90 % 4 4 6061
70 % 4 4 5917
50 % 4 4 5544
40 % 17 17 1706
30 % 25 25 1159
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 7847
95 % 2 2 8308
90 % 2 2 8255
70 % 2 2 7942
50 % 10 10 2048
40 % 10 10 2052
30 % 10 10 1982

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.