Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9067
95 % 2 2 9018
90 % 2 2 8919
70 % 2 2 8573
50 % 3 3 5801
40 % 3 3 5403
30 % 3 3 4755
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 5469
95 % 4 4 5760
90 % 4 4 5778
70 % 4 4 5644
50 % 4 4 5332
40 % 4 4 4983
30 % 4 4 4450
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9332
95 % 2 2 9017
90 % 2 2 8918
70 % 2 2 8572
50 % 10 10 2201
40 % 10 10 2187
30 % 10 10 2063

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures