Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8075
95 % 2 2 8354
90 % 2 2 8291
70 % 2 2 7969
50 % 3 3 4887
40 % 3 3 4619
30 % 3 3 4194
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 5048
95 % 4 4 5648
90 % 4 4 5652
70 % 4 4 5528
50 % 4 4 5202
40 % 10 10 2709
30 % 10 10 2543
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 7312
95 % 2 2 7743
90 % 2 2 7706
70 % 2 2 7418
50 % 10 10 1925
40 % 10 10 1934
30 % 10 10 1868

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.