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Placement of the Structural Proteins in Sindbis Virus
Sequence Clustering and Redundancy Reduction Results
1LD4
Sequence Clusters for the Sequence Entities in PDB 1LD4
Entity #1: Chains: A,B,C,D - Coat protein C protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 6256
95% 3 3 5629
90% 3 3 5627
70% 3 3 5531
50% 4 4 3576
40% 4 4 3411
30% 4 4 3165
Entity #2: Chains: E,F,G,H,I,J,K,L - GENERAL CONTROL PROTEIN GCN4 protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 3885
95% 4 4 4446
90% 4 4 4465
70% 4 4 4411
50% 4 4 4234
40% 10 10 2200
30% 10 10 2080
Entity #3: Chains: M,N,O,P - Spike glycoprotein E1 protein, length: 439 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 5657
95% 2 2 6179
90% 2 2 6156
70% 2 2 5959
50% 5 5 2205
40% 5 5 2222
30% 5 5 2103
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.