Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8517
95 % 2 2 8786
90 % 2 2 8710
70 % 2 2 8350
50 % 3 3 5126
40 % 3 3 4822
30 % 3 3 4377
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 5328
95 % 4 4 5959
90 % 4 4 5953
70 % 4 4 5817
50 % 4 4 5457
40 % 11 11 2587
30 % 11 11 2432
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 7730
95 % 2 2 8159
90 % 2 2 8106
70 % 2 2 7778
50 % 10 10 2009
40 % 10 10 2014
30 % 10 10 1944

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.