Sequence Similarity Clusters for the Entities in PDB 1LD4

Entity #1 | Chains: A,B,C,D
Coat protein C protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8958
95 % 2 2 9221
90 % 2 2 9132
70 % 2 2 8765
50 % 3 3 5394
40 % 3 3 5074
30 % 3 3 4592
Entity #2 | Chains: E,F,G,H,I,J,K,L
GENERAL CONTROL PROTEIN GCN4 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 5652
95 % 4 4 6283
90 % 4 4 6279
70 % 4 4 6120
50 % 4 4 5730
40 % 17 17 1775
30 % 25 25 1198
Entity #3 | Chains: M,N,O,P
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8142
95 % 2 2 8579
90 % 2 2 8515
70 % 2 2 8184
50 % 10 10 2134
40 % 10 10 2136
30 % 10 10 2050

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures