Sequence Similarity Clusters for the Entities in PDB 1LB2

Entity #1 | Chains: K
5'-D(*CP*TP*TP*TP*TP*TP*TP*CP*CP*TP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: J
5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*AP*GP*GP*AP*AP*AP*AP*AP*AP*G)-3' dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
CATABOLITE GENE ACTIVATOR PROTEIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 27 657
95 % 30 43 453 Flexibility: Medium
Max RMSD: 11.8, Avg RMSD: 4.4
PDBFlex
90 % 30 43 488
70 % 30 43 522
50 % 31 44 568
40 % 31 44 607
30 % 50 64 356
Entity #4 | Chains: B,E
DNA-directed RNA polymerase alpha chain protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3396
95 % 3 6 4163 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 6 4192
70 % 3 6 4119
50 % 3 6 3974
40 % 3 6 3803
30 % 3 6 3522

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.