Sequence Similarity Clusters for the Entities in PDB 1LB2

Entity #1 | Chains: K
5'-D(*CP*TP*TP*TP*TP*TP*TP*CP*CP*TP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: J
5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*AP*GP*GP*AP*AP*AP*AP*AP*AP*G)-3' dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
CATABOLITE GENE ACTIVATOR PROTEIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 32 647
95 % 30 44 499 Flexibility: Medium
Max RMSD: 11.8, Avg RMSD: 4.5
PDBFlex
90 % 30 44 535
70 % 30 44 570
50 % 31 45 596
40 % 31 45 635
30 % 51 67 399
Entity #4 | Chains: B,E
DNA-directed RNA polymerase alpha chain protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3816
95 % 3 6 4177 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 6 4225
70 % 3 6 4144
50 % 3 6 4015
40 % 3 6 3798
30 % 3 6 3472

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures