Sequence Similarity Clusters for the Entities in PDB 1LB1

Entity #1 | Chains: A,C,E,G
Guanine nucleotide exchange factor DBS protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19036
95 % 3 4 5642 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.7
PDBFlex
90 % 3 4 5662
70 % 3 4 5573
50 % 3 4 5275
40 % 3 4 4974
30 % 5 7 3514
Entity #2 | Chains: B,D,F,H
Transforming protein RhoA protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 1095
95 % 40 45 657 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.5
PDBFlex
90 % 40 45 685
70 % 42 47 688
50 % 116 143 193
40 % 117 144 203
30 % 680 817 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures