Sequence Similarity Clusters for the Entities in PDB 1LB1

Entity #1 | Chains: A,C,E,G
Guanine nucleotide exchange factor DBS protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18578
95 % 3 4 5521 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.7
PDBFlex
90 % 3 4 5540
70 % 3 4 5459
50 % 3 4 5169
40 % 3 4 4877
30 % 5 7 3445
Entity #2 | Chains: B,D,F,H
Transforming protein RhoA protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 17 1245
95 % 37 43 690 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.5
PDBFlex
90 % 37 43 716
70 % 39 45 713
50 % 111 137 194
40 % 112 138 208
30 % 649 782 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.