Sequence Similarity Clusters for the Entities in PDB 1LB1

Entity #1 | Chains: A,C,E,G
Guanine nucleotide exchange factor DBS protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 5753
95 % 3 4 5920 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.7
PDBFlex
90 % 3 4 5930
70 % 3 4 5803
50 % 3 4 5243
40 % 5 6 4509
30 % 5 7 3439
Entity #2 | Chains: B,D,F,H
Transforming protein RhoA protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 1285
95 % 40 45 672 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.4
PDBFlex
90 % 40 45 690
70 % 42 47 700
50 % 118 145 194
40 % 118 145 211
30 % 700 837 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures