Sequence Similarity Clusters for the Entities in PDB 1LB1

Entity #1 | Chains: A,C,E,G
Guanine nucleotide exchange factor DBS protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19351
95 % 3 4 5728 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.7
PDBFlex
90 % 3 4 5753
70 % 3 4 5655
50 % 3 4 5346
40 % 3 4 5034
30 % 5 7 3560
Entity #2 | Chains: B,D,F,H
Transforming protein RhoA protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 1111
95 % 40 45 662 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.5
PDBFlex
90 % 40 45 690
70 % 42 47 695
50 % 116 143 197
40 % 117 144 205
30 % 685 822 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures