Sequence Similarity Clusters for the Entities in PDB 1LAJ

Entity #1 | Chains: R
5'-R(*AP*AP*A)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
capsid protein protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27013
95 % 1 1 22509 Flexibility: Medium
Max RMSD: 4.3, Avg RMSD: 3.1
PDBFlex
90 % 1 1 21814
70 % 1 1 20013
50 % 1 1 17356
40 % 1 2 9112
30 % 1 2 7940

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.