Sequence Similarity Clusters for the Entities in PDB 1L9Z

Entity #1 | Chains: U
nontemplate DNA strand dna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: T
template DNA strand dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
RNA POLYMERASE, ALPHA SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 1441
95 % 12 13 1492 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.6
PDBFlex
90 % 12 13 1518
70 % 58 59 237
50 % 58 59 257
40 % 118 119 143
30 % 119 120 157
Entity #4 | Chains: C
RNA POLYMERASE, BETA SUBUNIT protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 13 3149
95 % 12 13 3455 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 2.6
PDBFlex
90 % 58 59 511
70 % 58 59 551
50 % 77 78 475
40 % 141 142 242
30 % 305 306 144
Entity #5 | Chains: D
RNA POLYMERASE, BETA-PRIME SUBUNIT protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 3368
95 % 9 10 3674 Flexibility: Medium
Max RMSD: 11.1, Avg RMSD: 4.4
PDBFlex
90 % 55 56 519
70 % 58 59 531
50 % 77 78 467
40 % 141 142 238
30 % 141 142 255
Entity #6 | Chains: E
RNA POLYMERASE, OMEGA SUBUNIT protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 3369
95 % 11 12 3675 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 57 58 520
70 % 57 58 559
50 % 57 58 592
40 % 57 58 631
30 % 57 58 630
Entity #7 | Chains: H
SIGMA FACTOR SIGA protein, length: 438 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56466
95 % 1 1 46313
90 % 1 1 44023
70 % 37 37 1003
50 % 37 37 1058
40 % 37 37 1067
30 % 37 37 1064

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures