Sequence Similarity Clusters for the Entities in PDB 1L9Z

Entity #1 | Chains: U
nontemplate DNA strand dna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: T
template DNA strand dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
RNA POLYMERASE, ALPHA SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 1241
95 % 12 13 1370 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.6
PDBFlex
90 % 12 13 1389
70 % 56 57 200
50 % 56 57 240
40 % 90 91 154
30 % 91 92 167
Entity #4 | Chains: C
RNA POLYMERASE, BETA SUBUNIT protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24249
95 % 12 13 3156 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.6
PDBFlex
90 % 56 57 448
70 % 56 57 483
50 % 70 71 480
40 % 70 71 514
30 % 70 71 514
Entity #5 | Chains: D
RNA POLYMERASE, BETA-PRIME SUBUNIT protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2875
95 % 9 10 3267 Flexibility: Medium
Max RMSD: 11.1, Avg RMSD: 4.1
PDBFlex
90 % 53 54 454
70 % 53 54 493
50 % 53 54 556
40 % 53 54 595
30 % 53 54 587
Entity #6 | Chains: E
RNA POLYMERASE, OMEGA SUBUNIT protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2859
95 % 11 12 3554 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 55 56 464
70 % 55 56 502
50 % 55 56 561
40 % 55 56 597
30 % 55 56 591
Entity #7 | Chains: H
SIGMA FACTOR SIGA protein, length: 438 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51349
95 % 1 1 37582
90 % 1 1 35936
70 % 36 36 970
50 % 36 36 1009
40 % 50 50 828
30 % 50 50 818

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.