Sequence Similarity Clusters for the Entities in PDB 1L9Z

Entity #1 | Chains: U
nontemplate DNA strand dna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: T
template DNA strand dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
RNA POLYMERASE, ALPHA SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 1110
95 % 11 12 1347
90 % 11 12 1375
70 % 51 52 185
50 % 51 52 231
40 % 71 72 182
30 % 72 73 195
Entity #4 | Chains: C
RNA POLYMERASE, BETA SUBUNIT protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 22698
95 % 11 12 3063
90 % 51 52 422
70 % 51 52 465
50 % 51 52 543
40 % 51 52 580
30 % 51 52 583
Entity #5 | Chains: D
RNA POLYMERASE, BETA-PRIME SUBUNIT protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 2676
95 % 8 9 3349
90 % 48 49 426
70 % 48 49 471
50 % 48 49 550
40 % 48 49 587
30 % 48 49 591
Entity #6 | Chains: E
RNA POLYMERASE, OMEGA SUBUNIT protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 2779
95 % 10 11 3484
90 % 50 51 428
70 % 50 51 476
50 % 50 51 554
40 % 50 51 590
30 % 50 51 596
Entity #7 | Chains: H
SIGMA FACTOR SIGA protein, length: 438 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48089
95 % 1 1 35186
90 % 1 1 33697
70 % 32 32 980
50 % 32 32 1026
40 % 32 32 1042
30 % 32 32 1032

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.