Sequence Similarity Clusters for the Entities in PDB 1L9Z

Entity #1 | Chains: U
nontemplate DNA strand dna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: T
template DNA strand dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
RNA POLYMERASE, ALPHA SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 1258
95 % 12 13 1387 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.6
PDBFlex
90 % 12 13 1407
70 % 56 57 203
50 % 56 57 243
40 % 91 92 156
30 % 92 93 168
Entity #4 | Chains: C
RNA POLYMERASE, BETA SUBUNIT protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24689
95 % 12 13 3200 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 2.6
PDBFlex
90 % 56 57 454
70 % 56 57 489
50 % 70 71 487
40 % 70 71 524
30 % 70 71 525
Entity #5 | Chains: D
RNA POLYMERASE, BETA-PRIME SUBUNIT protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2914
95 % 9 10 3320 Flexibility: Medium
Max RMSD: 11.1, Avg RMSD: 4.1
PDBFlex
90 % 53 54 464
70 % 53 54 500
50 % 53 54 564
40 % 53 54 605
30 % 53 54 593
Entity #6 | Chains: E
RNA POLYMERASE, OMEGA SUBUNIT protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2898
95 % 11 12 3599 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 55 56 472
70 % 55 56 510
50 % 55 56 572
40 % 55 56 608
30 % 55 56 599
Entity #7 | Chains: H
SIGMA FACTOR SIGA protein, length: 438 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52092
95 % 1 1 38135
90 % 1 1 36448
70 % 36 36 979
50 % 36 36 1020
40 % 50 50 838
30 % 50 50 825

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.