Sequence Similarity Clusters for the Entities in PDB 1L9Z

Entity #1 | Chains: U
nontemplate DNA strand dna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: T
template DNA strand dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
RNA POLYMERASE, ALPHA SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 1198
95 % 12 13 1346 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.6
PDBFlex
90 % 12 13 1363
70 % 54 55 220
50 % 54 55 248
40 % 86 87 158
30 % 87 88 172
Entity #4 | Chains: C
RNA POLYMERASE, BETA SUBUNIT protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23905
95 % 12 13 3106 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.5
PDBFlex
90 % 54 55 447
70 % 54 55 485
50 % 67 68 486
40 % 67 68 524
30 % 67 68 525
Entity #5 | Chains: D
RNA POLYMERASE, BETA-PRIME SUBUNIT protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2819
95 % 9 10 3221 Flexibility: Medium
Max RMSD: 11.1, Avg RMSD: 4.1
PDBFlex
90 % 51 52 462
70 % 51 52 497
50 % 51 52 562
40 % 51 52 605
30 % 51 52 601
Entity #6 | Chains: E
RNA POLYMERASE, OMEGA SUBUNIT protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2803
95 % 11 12 3500 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 53 54 473
70 % 53 54 510
50 % 53 54 573
40 % 53 54 616
30 % 53 54 613
Entity #7 | Chains: H
SIGMA FACTOR SIGA protein, length: 438 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50625
95 % 1 1 37057
90 % 1 1 35451
70 % 34 34 1014
50 % 34 34 1051
40 % 47 47 875
30 % 47 47 861

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.