Sequence Similarity Clusters for the Entities in PDB 1L9U

Entity #1 | Chains: A,B,J,K
RNA POLYMERASE, ALPHA SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 1147
95 % 12 12 1376
90 % 12 12 1404
70 % 52 52 201
50 % 52 52 241
40 % 79 79 169
30 % 80 80 185
Entity #2 | Chains: C,L
RNA POLYMERASE, BETA SUBUNIT protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23194
95 % 12 12 3131
90 % 52 52 458
70 % 52 52 498
50 % 53 53 549
40 % 53 53 595
30 % 53 53 591
Entity #3 | Chains: D,M
RNA POLYMERASE, BETA-PRIME SUBUNIT protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 2742
95 % 9 9 3429
90 % 49 49 469
70 % 49 49 509
50 % 49 49 570
40 % 49 49 604
30 % 49 49 603
Entity #4 | Chains: E,N
RNA POLYMERASE, OMEGA SUBUNIT protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 2846
95 % 11 11 3570
90 % 51 51 475
70 % 51 51 519
50 % 51 51 575
40 % 51 51 606
30 % 51 51 608
Entity #5 | Chains: H,Q
SIGMA FACTOR SIGA protein, length: 332 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33103
95 % 6 6 5085
90 % 6 6 5104
70 % 6 6 5047
50 % 6 6 4809
40 % 6 6 4556
30 % 6 6 4148

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.