Sequence Similarity Clusters for the Entities in PDB 1L9U

Entity #1 | Chains: A,B,J,K
RNA POLYMERASE, ALPHA SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 1286
95 % 13 13 1404 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.6
PDBFlex
90 % 13 13 1426
70 % 57 57 228
50 % 57 57 251
40 % 93 93 157
30 % 94 94 167
Entity #2 | Chains: C,L
RNA POLYMERASE, BETA SUBUNIT protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24946
95 % 13 13 3252 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 2.6
PDBFlex
90 % 57 57 465
70 % 57 57 502
50 % 71 71 493
40 % 71 71 531
30 % 71 71 527
Entity #3 | Chains: D,M
RNA POLYMERASE, BETA-PRIME SUBUNIT protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 2969
95 % 10 10 3368
90 % 54 54 474
70 % 54 54 514
50 % 54 54 574
40 % 54 54 615
30 % 54 54 600
Entity #4 | Chains: E,N
RNA POLYMERASE, OMEGA SUBUNIT protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 2953
95 % 12 12 3644 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 56 56 484
70 % 56 56 526
50 % 56 56 581
40 % 56 56 617
30 % 56 56 604
Entity #5 | Chains: H,Q
SIGMA FACTOR SIGA protein, length: 332 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35599
95 % 7 7 5073 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 7 7 5099
70 % 7 7 4993
50 % 7 7 4784
40 % 7 7 4531
30 % 7 7 4157

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.