Sequence Similarity Clusters for the Entities in PDB 1L9J

Entity #1 | Chains: L,R
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 410
95 % 94 97 339 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 94 97 365
70 % 94 97 403
50 % 114 126 331
40 % 114 126 357
30 % 114 126 366
Entity #2 | Chains: M,S
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 62 460
95 % 94 97 338 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 94 97 364
70 % 94 97 401
50 % 114 126 330
40 % 114 126 355
30 % 114 126 364
Entity #3 | Chains: H,T
REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 96 246
95 % 94 97 340 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 94 97 366
70 % 94 97 404
50 % 94 97 473
40 % 114 126 358
30 % 114 126 367
Entity #4 | Chains: C,D
cytochrome c-2 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 10317
95 % 5 5 10316 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 5 5 10179
70 % 5 5 9653
50 % 7 7 5661
40 % 112 154 177
30 % 112 154 191

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.