Sequence Similarity Clusters for the Entities in PDB 1L9J

Entity #1 | Chains: L,R
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 331
95 % 93 96 319
90 % 93 96 343
70 % 93 96 379
50 % 113 120 327
40 % 113 120 353
30 % 113 120 358
Entity #2 | Chains: M,S
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 61 407
95 % 93 96 318
90 % 93 96 341
70 % 93 96 378
50 % 113 120 326
40 % 113 120 351
30 % 113 120 357
Entity #3 | Chains: H,T
REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 95 229
95 % 93 96 321
90 % 93 96 344
70 % 93 96 380
50 % 93 96 438
40 % 113 120 354
30 % 113 120 359
Entity #4 | Chains: C,D
cytochrome c-2 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 9811
95 % 5 5 9822
90 % 5 5 9698
70 % 5 5 9195
50 % 7 7 5393
40 % 107 147 178
30 % 107 147 193

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.