Sequence Similarity Clusters for the Entities in PDB 1L9J

Entity #1 | Chains: L,R
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 90 344
95 % 94 97 387 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 94 97 412
70 % 94 97 455
50 % 118 131 398
40 % 118 131 422
30 % 118 131 418
Entity #2 | Chains: M,S
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 56 658
95 % 94 97 390 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 94 97 414
70 % 94 97 458
50 % 118 131 399
40 % 118 131 423
30 % 118 131 419
Entity #3 | Chains: H,T
REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 96 311
95 % 94 97 395 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 94 97 421
70 % 94 97 461
50 % 94 97 517
40 % 118 131 424
30 % 118 131 421
Entity #4 | Chains: C,D
cytochrome c-2 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 11769
95 % 5 5 11373 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 5 5 11221
70 % 5 5 10597
50 % 7 7 6152
40 % 120 162 186
30 % 120 162 206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures