Sequence Similarity Clusters for the Entities in PDB 1L9J

Entity #1 | Chains: L,R
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 433
95 % 94 97 345 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 94 97 371
70 % 94 97 407
50 % 117 129 340
40 % 117 129 369
30 % 117 129 369
Entity #2 | Chains: M,S
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 62 483
95 % 94 97 344 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.9
PDBFlex
90 % 94 97 370
70 % 94 97 405
50 % 117 129 339
40 % 117 129 368
30 % 117 129 368
Entity #3 | Chains: H,T
REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 96 250
95 % 94 97 346 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 94 97 372
70 % 94 97 408
50 % 94 97 482
40 % 117 129 370
30 % 117 129 370
Entity #4 | Chains: C,D
cytochrome c-2 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 10485
95 % 5 5 10489 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 5 5 10351
70 % 5 5 9812
50 % 7 7 5751
40 % 114 156 177
30 % 114 156 190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.