Sequence Similarity Clusters for the Entities in PDB 1L9B

Entity #1 | Chains: L
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 68 418
95 % 39 97 344 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 97 369
70 % 39 97 407
50 % 54 126 344
40 % 54 126 371
30 % 54 126 377
Entity #2 | Chains: M
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 62 466
95 % 39 97 343
90 % 39 97 368
70 % 39 97 405
50 % 54 126 343
40 % 54 126 370
30 % 54 126 375
Entity #3 | Chains: H
REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 96 248
95 % 39 97 345 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 39 97 370
70 % 39 97 408
50 % 39 97 480
40 % 54 126 372
30 % 54 126 378
Entity #4 | Chains: C
cytochrome c-2 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10408
95 % 4 5 10405 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 5 10266
70 % 4 5 9735
50 % 6 7 5711
40 % 99 156 177
30 % 99 156 190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.