Sequence Similarity Clusters for the Entities in PDB 1L9B

Entity #1 | Chains: L
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 68 448
95 % 39 97 364 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 39 97 391
70 % 39 97 430
50 % 55 129 379
40 % 55 129 402
30 % 55 129 404
Entity #2 | Chains: M
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 62 503
95 % 39 97 363 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 39 97 390
70 % 39 97 428
50 % 55 129 378
40 % 55 129 401
30 % 55 129 403
Entity #3 | Chains: H
REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 96 270
95 % 39 97 365 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 39 97 392
70 % 39 97 431
50 % 39 97 503
40 % 55 129 403
30 % 55 129 405
Entity #4 | Chains: C
cytochrome c-2 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10900
95 % 4 5 10884 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 5 10734
70 % 4 5 10198
50 % 6 7 5977
40 % 101 158 179
30 % 101 158 190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures