Sequence Similarity Clusters for the Entities in PDB 1L8D

Entity #1 | Chains: A,B
DNA double-strand break repair rad50 ATPase protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47978
95 % 1 1 35866 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 34235
70 % 1 1 30419
50 % 1 1 25915
40 % 1 1 22828
30 % 1 1 19315

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures