Sequence Similarity Clusters for the Entities in PDB 1L7V

Entity #1 | Chains: A,B
VITAMIN B12 TRANSPORT SYSTEM PERMEASE PROTEIN BTUC protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5461
95 % 5 5 5794 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 5 5 5810
70 % 5 5 5683
50 % 5 5 5392
40 % 7 8 3572
30 % 8 9 2970
Entity #2 | Chains: C,D
Vitamin B12 transport ATP-binding protein btuD protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5514
95 % 5 5 5840 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 5 5 5853
70 % 5 5 5718
50 % 5 5 5416
40 % 5 5 5071
30 % 6 7 3541

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures