Sequence Similarity Clusters for the Entities in PDB 1L7V

Entity #1 | Chains: A,B
VITAMIN B12 TRANSPORT SYSTEM PERMEASE PROTEIN BTUC protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5310
95 % 5 5 5636 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 5 5 5663
70 % 5 5 5549
50 % 5 5 5278
40 % 7 8 3488
30 % 8 9 2918
Entity #2 | Chains: C,D
Vitamin B12 transport ATP-binding protein btuD protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5360
95 % 5 5 5680 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 5 5 5706
70 % 5 5 5583
50 % 5 5 5301
40 % 5 5 4975
30 % 6 7 3477

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures