Sequence Similarity Clusters for the Entities in PDB 1L7V

Entity #1 | Chains: A,B
VITAMIN B12 TRANSPORT SYSTEM PERMEASE PROTEIN BTUC protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34576
95 % 5 5 5325 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 5 5 5342
70 % 5 5 5278
50 % 5 5 5011
40 % 7 8 3169
30 % 8 9 2698
Entity #2 | Chains: C,D
Vitamin B12 transport ATP-binding protein btuD protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37452
95 % 5 5 5533 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 5 5 5544
70 % 5 5 5451
50 % 5 5 5149
40 % 5 5 4844
30 % 6 7 3398

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.