Sequence Similarity Clusters for the Entities in PDB 1L7V

Entity #1 | Chains: A,B
VITAMIN B12 TRANSPORT SYSTEM PERMEASE PROTEIN BTUC protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36481
95 % 5 5 5652 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.0
PDBFlex
90 % 5 5 5673
70 % 5 5 5582
50 % 5 5 5286
40 % 7 8 3337
30 % 8 9 2836
Entity #2 | Chains: C,D
Vitamin B12 transport ATP-binding protein btuD protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39439
95 % 5 5 5866 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 5 5 5881
70 % 5 5 5760
50 % 5 5 5427
40 % 5 5 5106
30 % 6 7 3564

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures