Sequence Similarity Clusters for the Entities in PDB 1L7V

Entity #1 | Chains: A,B
VITAMIN B12 TRANSPORT SYSTEM PERMEASE PROTEIN BTUC protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5199
95 % 5 5 5529 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.0
PDBFlex
90 % 5 5 5556
70 % 5 5 5431
50 % 5 5 5170
40 % 7 8 3424
30 % 8 9 2860
Entity #2 | Chains: C,D
Vitamin B12 transport ATP-binding protein btuD protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5249
95 % 5 5 5567 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 5 5 5594
70 % 5 5 5462
50 % 5 5 5191
40 % 5 5 4867
30 % 6 7 3413

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures