Sequence Similarity Clusters for the Entities in PDB 1L5G

Entity #1 | Chains: A
INTEGRIN ALPHA V protein, length: 957 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 5565
95 % 8 14 4558 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 8 14 4581
70 % 8 14 4489
50 % 8 14 4311
40 % 8 14 4111
30 % 9 16 3207
Entity #2 | Chains: B
INTEGRIN BETA-3 protein, length: 692 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 16539
95 % 9 16 3655
90 % 9 16 3708
70 % 9 16 3660
50 % 9 16 3559
40 % 11 22 1730
30 % 11 22 1689
Entity #3 | Chains: C
CYCLIC ARG-GLY-ASP PEPTIDE protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.