Sequence Similarity Clusters for the Entities in PDB 1L5G

Entity #1 | Chains: A
INTEGRIN ALPHA V protein, length: 957 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 5364
95 % 8 11 5990 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 8 11 5980
70 % 8 11 5842
50 % 8 11 5477
40 % 8 11 5141
30 % 9 13 3681
Entity #2 | Chains: B
INTEGRIN BETA-3 protein, length: 692 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16009
95 % 9 13 4395 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 9 13 4422
70 % 9 13 4347
50 % 9 13 4189
40 % 11 19 1850
30 % 11 19 1795
Entity #3 | Chains: C
CYCLIC ARG-GLY-ASP PEPTIDE protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.