Sequence Similarity Clusters for the Entities in PDB 1L4D

Entity #1 | Chains: A
PLASMINOGEN protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 8691
95 % 6 10 3219 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 6 10 3264
70 % 6 10 3233
50 % 6 10 3154
40 % 1386 1682 4
30 % 1495 1831 6
Entity #2 | Chains: B
STREPTOKINASE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66040
95 % 1 1 45396
90 % 1 1 43094
70 % 1 1 37914
50 % 1 1 32343
40 % 1 1 28580
30 % 1 1 24209

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.