Sequence Similarity Clusters for the Entities in PDB 1L4D

Entity #1 | Chains: A
PLASMINOGEN protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9001
95 % 6 10 3345 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 6 10 3392
70 % 6 10 3353
50 % 6 10 3264
40 % 1416 1719 4
30 % 1525 1869 6
Entity #2 | Chains: B
STREPTOKINASE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68368
95 % 1 1 47007
90 % 1 1 44559
70 % 1 1 39058
50 % 1 1 33241
40 % 1 1 29351
30 % 1 1 24862

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures