Sequence Similarity Clusters for the Entities in PDB 1L4D

Entity #1 | Chains: A
PLASMINOGEN protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9236
95 % 6 10 3429 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 6 10 3481
70 % 6 10 3437
50 % 6 10 3349
40 % 1526 1863 4
30 % 1536 1885 6
Entity #2 | Chains: B
STREPTOKINASE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69615
95 % 1 1 47811
90 % 1 1 45286
70 % 1 1 39674
50 % 1 1 33743
40 % 1 1 29790
30 % 1 1 25219

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures