Sequence Similarity Clusters for the Entities in PDB 1L4D

Entity #1 | Chains: A
PLASMINOGEN protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10458
95 % 6 10 3502 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 6 10 3570
70 % 6 10 3516
50 % 6 10 3431
40 % 1537 1885 4
30 % 1546 1899 7
Entity #2 | Chains: B
STREPTOKINASE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57546
95 % 1 1 53389
90 % 1 1 50597
70 % 1 1 44219
50 % 1 1 37491
40 % 1 1 32800
30 % 1 1 27427

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures