Sequence Similarity Clusters for the Entities in PDB 1L4A

Entity #1 | Chains: A
SYNAPTOBREVIN protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61003
95 % 1 1 49725
90 % 1 1 47176
70 % 1 1 41348
50 % 1 1 35078
40 % 1 1 30735
30 % 1 1 25676
Entity #2 | Chains: B
S-SYNTAXIN protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47417
95 % 1 1 49727
90 % 1 1 47178
70 % 2 2 16803
50 % 2 2 14661
40 % 2 2 13061
30 % 2 2 10989
Entity #3 | Chains: C
S-SNAP25 fusion protein protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61004
95 % 1 1 49726
90 % 1 1 47177
70 % 1 1 41349
50 % 10 19 1763
40 % 10 19 1756
30 % 10 19 1714
Entity #4 | Chains: D
S-SNAP25 fusion protein protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61001
95 % 1 1 49724
90 % 1 1 47175
70 % 1 1 41347
50 % 2 2 15760
40 % 2 2 13987
30 % 2 2 11748
Entity #5 | Chains: E
SYNAPHIN A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61000
95 % 1 1 49723
90 % 1 1 47174
70 % 1 1 41346
50 % 1 1 35077
40 % 1 1 30734
30 % 1 1 25675

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures