Sequence Similarity Clusters for the Entities in PDB 1L4A

Entity #1 | Chains: A
SYNAPTOBREVIN protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71328
95 % 1 1 49406
90 % 1 1 46873
70 % 1 1 41100
50 % 1 1 35061
40 % 1 1 30914
30 % 1 1 26086
Entity #2 | Chains: B
S-SYNTAXIN protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70670
95 % 1 1 48892
90 % 1 1 46382
70 % 2 2 18383
50 % 2 2 15968
40 % 2 2 14243
30 % 2 2 12190
Entity #3 | Chains: C
S-SNAP25 fusion protein protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71079
95 % 1 1 49210
90 % 1 1 46685
70 % 1 1 40934
50 % 10 19 1654
40 % 10 19 1671
30 % 10 19 1636
Entity #4 | Chains: D
S-SNAP25 fusion protein protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70761
95 % 1 1 48969
90 % 1 1 46457
70 % 1 1 40730
50 % 11 19 1542
40 % 13 21 1341
30 % 14 22 1292
Entity #5 | Chains: E
SYNAPHIN A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71415
95 % 1 1 49479
90 % 1 1 46946
70 % 1 1 41163
50 % 1 1 35113
40 % 1 1 30955
30 % 1 1 26123

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.