Sequence Similarity Clusters for the Entities in PDB 1L4A

Entity #1 | Chains: A
SYNAPTOBREVIN protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72272
95 % 1 1 50013
90 % 1 1 47420
70 % 1 1 41555
50 % 1 1 35442
40 % 1 1 31239
30 % 1 1 26360
Entity #2 | Chains: B
S-SYNTAXIN protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71608
95 % 1 1 49497
90 % 1 1 46928
70 % 2 2 18665
50 % 2 2 16200
40 % 2 2 14441
30 % 2 2 12362
Entity #3 | Chains: C
S-SNAP25 fusion protein protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72022
95 % 1 1 49816
90 % 1 1 47231
70 % 1 1 41388
50 % 10 19 1686
40 % 10 19 1701
30 % 10 19 1665
Entity #4 | Chains: D
S-SNAP25 fusion protein protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71699
95 % 1 1 49574
90 % 1 1 47003
70 % 1 1 41183
50 % 11 19 1565
40 % 13 21 1354
30 % 14 22 1312
Entity #5 | Chains: E
SYNAPHIN A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72359
95 % 1 1 50086
90 % 1 1 47493
70 % 1 1 41618
50 % 1 1 35494
40 % 1 1 31280
30 % 1 1 26397

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures