Sequence Similarity Clusters for the Entities in PDB 1L4A

Entity #1 | Chains: A
SYNAPTOBREVIN protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73667
95 % 1 1 50927
90 % 1 1 48249
70 % 1 1 42253
50 % 1 1 36011
40 % 1 1 31740
30 % 1 1 26773
Entity #2 | Chains: B
S-SYNTAXIN protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72990
95 % 1 1 50404
90 % 1 1 47750
70 % 2 2 19028
50 % 2 2 16493
40 % 2 2 14692
30 % 2 2 12566
Entity #3 | Chains: C
S-SNAP25 fusion protein protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73411
95 % 1 1 50728
90 % 1 1 48058
70 % 1 1 42084
50 % 10 19 1731
40 % 10 19 1746
30 % 10 19 1707
Entity #4 | Chains: D
S-SNAP25 fusion protein protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73083
95 % 1 1 50483
90 % 1 1 47827
70 % 1 1 41876
50 % 11 19 1607
40 % 13 21 1381
30 % 14 22 1339
Entity #5 | Chains: E
SYNAPHIN A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73754
95 % 1 1 51000
90 % 1 1 48322
70 % 1 1 42316
50 % 1 1 36063
40 % 1 1 31781
30 % 1 1 26810

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures