Sequence Similarity Clusters for the Entities in PDB 1L4A

Entity #1 | Chains: A
SYNAPTOBREVIN protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70396
95 % 1 1 48753
90 % 1 1 46276
70 % 1 1 40649
50 % 1 1 34700
40 % 1 1 30592
30 % 1 1 25802
Entity #2 | Chains: B
S-SYNTAXIN protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69744
95 % 1 1 48244
90 % 1 1 45788
70 % 2 2 18171
50 % 2 2 15788
40 % 2 2 14084
30 % 2 2 12047
Entity #3 | Chains: C
S-SNAP25 fusion protein protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70150
95 % 1 1 48560
90 % 1 1 46091
70 % 1 1 40484
50 % 10 19 1633
40 % 10 19 1652
30 % 10 19 1619
Entity #4 | Chains: D
S-SNAP25 fusion protein protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69835
95 % 1 1 48321
90 % 1 1 45863
70 % 1 1 40280
50 % 11 19 1523
40 % 13 21 1325
30 % 14 22 1279
Entity #5 | Chains: E
SYNAPHIN A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70484
95 % 1 1 48827
90 % 1 1 46350
70 % 1 1 40713
50 % 1 1 34753
40 % 1 1 30634
30 % 1 1 25840

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.