Sequence Similarity Clusters for the Entities in PDB 1L3U

Entity #1 | Chains: B
5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*GP*AP*C*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA Polymerase I protein, length: 580 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 46 832
95 % 39 95 321 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 39 95 335
70 % 39 95 378
50 % 39 95 442
40 % 39 95 467
30 % 39 95 462

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures