Sequence Similarity Clusters for the Entities in PDB 1L3T

Entity #1 | Chains: B
5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*GP*AP*CP*G*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA Polymerase I protein, length: 580 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 46 797
95 % 34 95 297 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 34 95 309
70 % 34 95 354
50 % 34 95 417
40 % 34 95 443
30 % 34 95 443

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3TAN 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
2 3PV8 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
3 4E0D 1 A DNA polymerase Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
4 4YFU 1 A, D DNA polymerase 1422 2.7.7.7 | Details
5 4DQQ 1 A, D DNA polymerase un residues 287-878 1462 2.7.7.7 | Details
6 4F3O 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
7 4F4K 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
8 3TAR 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
9 3PX6 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
10 4F2R 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
11 4DQS 1 A DNA polymerase un residues 287-878 1462 2.7.7.7 | Details
12 4EZ9 1 A, D DNA polymerase Bacillus Fragment (analogous to E. coli Klenow Fragment, unp residues 287-878) 1462 2.7.7.7 | Details
13 3TAQ 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
14 4EZ6 1 A, D DNA polymerase Bacillus Fragment (analogous to E. coli Klenow Fragment, unp residues 287-878) 1462 2.7.7.7 | Details
15 4DQI 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
16 4F2S 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
17 3TI0 1 A, D DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
18 2HHV 3 A DNA Polymerase I residues 299-876 (analogous to E Coli Klenow fragment) 1422 2.7.7.7 | Details
19 4F8R 1 A, D DNA polymerase unp residues 287-898 1462 2.7.7.7 | Details
20 3TAP 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
21 3THV 1 A, D DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
22 4DSF 1 A, D DNA polymerase un residues 287-878 1462 2.7.7.7 | Details
23 4DSE 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
24 3PX4 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
25 4DS4 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
26 4DS5 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
27 1U4B 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
28 4DQP 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
29 4B9S 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
30 1NK4 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
31 1L3S 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
32 1NK0 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
33 3PX0 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
34 1L3T 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
35 1NJX 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
36 1L3V 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
37 3HT3 1 A, D DNA polymerase I, large fragment Residues 298-876 1422 2.7.7.7 | Details
38 3HPO 1 A DNA polymerase I, large fragment Residues 297-876 1422 2.7.7.7 | Details
39 1L3U 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
40 1NKC 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
41 2HHU 3 A DNA Polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
42 4DQR 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
43 2HHQ 3 A DNA polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
44 3HP6 1 A, D DNA polymerase I, large fragment Residues 297-876 1422 2.7.7.7 | Details
45 2HHS 3 A DNA polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
46 2HHW 3 A, D DNA Polymerase I residues 299-876 (analogous to E coli Klenow fragment) 1422 2.7.7.7 | Details
47 1XWL 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
48 4DWI 1 A DNA polymerase 1422 2.7.7.7 | Details
49 1NKE 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
50 4UQG 1 A DNA POLYMERASE POLYMERASE DOMAIN, RESIDUES 2-580 1422 2.7.7.7 | Details
51 1NK8 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
52 1L5U 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
53 2BDP 3 A PROTEIN (DNA POLYMERASE I) RESIDUES 297-876 1422 2.7.7.7 | Details
54 3EZ5 1 A, D DNA polymerase I 1422 2.7.7.7 | Details
55 4B9V 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
56 4BDP 3 A PROTEIN (DNA POLYMERASE I) RESIDUES 297-876 1422 2.7.7.7 | Details
57 2HVI 3 A, D DNA Polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
58 1NK7 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
59 1XC9 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
60 1NK9 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
61 1U45 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
62 4B9M 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
63 1NJW 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
64 4B9L 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
65 2HW3 3 A DNA Polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
66 1LV5 3 A, B DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
67 4DSI 1 A DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
68 2HHT 3 A DNA polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
69 1U47 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
70 1UA1 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
71 4B9U 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
72 3BDP 3 A PROTEIN (DNA POLYMERASE I) RESIDUES 297-876 1422 2.7.7.7 | Details
73 1NKB 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
74 4O0I 1 A DNA polymerase I 1422 2.7.7.7 | Details
75 1U48 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
76 4B9N 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
77 1NJY 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
78 4DSK 3 A DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
79 3EYZ 1 A DNA polymerase I 1422 2.7.7.7 | Details
80 1UA0 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
81 2Y1J 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
82 1NK5 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
83 1NJZ 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
84 1U49 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
85 2XY5 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
86 1NK6 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
87 2HHX 3 A DNA Polymerase I residues 299-876 (Analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
88 2XY6 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
89 2HVH 3 A, D DNA Polymerase I residues 299-876 (analogous to E. coli Klenow fragment) 1422 2.7.7.7 | Details
90 4DSL 1 A DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
91 4B9T 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
92 2XO7 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
93 4DSJ 1 A, B DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
94 2Y1I 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
95 2XY7 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details