Sequence Similarity Clusters for the Entities in PDB 1L3L

Entity #1 | Chains: E,F,G,H
5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
Transcriptional activator protein traR protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 8966
95 % 1 2 9221 Flexibility: High
Max RMSD: 17.6, Avg RMSD: 10.2
PDBFlex
90 % 1 2 9127
70 % 1 2 8749
50 % 1 2 7923
40 % 1 2 7283
30 % 1 2 6424

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.