Sequence Similarity Clusters for the Entities in PDB 1L3L

Entity #1 | Chains: E,F,G,H
5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
Transcriptional activator protein traR protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10288
95 % 1 2 10017 Flexibility: High
Max RMSD: 17.6, Avg RMSD: 10.3
PDBFlex
90 % 1 2 9892
70 % 1 2 9416
50 % 1 2 8545
40 % 1 2 7780
30 % 1 2 6739

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures