Sequence Similarity Clusters for the Entities in PDB 1L3E

Entity #1 | Chains: A
hypoxia inducible factor-1 alpha subunit protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 25163
95 % 4 4 21437
90 % 4 4 20818
70 % 4 4 19117
50 % 4 4 16602
40 % 4 4 14799
30 % 4 4 12672
Entity #2 | Chains: B
p300 protein protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 47948
95 % 2 2 35807
90 % 7 7 10869
70 % 7 7 10314
50 % 7 7 9334
40 % 7 7 8536
30 % 12 13 4346

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures