Sequence Similarity Clusters for the Entities in PDB 1L3E

Entity #1 | Chains: A
hypoxia inducible factor-1 alpha subunit protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 25586
95 % 4 4 21779
90 % 4 4 21142
70 % 4 4 19399
50 % 4 4 16831
40 % 4 4 14999
30 % 4 4 12842
Entity #2 | Chains: B
p300 protein protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 48636
95 % 2 2 36302
90 % 7 7 11080
70 % 7 7 10503
50 % 7 7 9495
40 % 7 7 8679
30 % 12 13 4415

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures