Sequence Similarity Clusters for the Entities in PDB 1L3E

Entity #1 | Chains: A
hypoxia inducible factor-1 alpha subunit protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 24733
95 % 4 4 21115
90 % 4 4 20523
70 % 4 4 18853
50 % 4 4 16375
40 % 4 4 14606
30 % 4 4 12511
Entity #2 | Chains: B
p300 protein protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 47265
95 % 2 2 35347
90 % 7 7 10715
70 % 7 7 10168
50 % 7 7 9205
40 % 7 7 8420
30 % 12 13 4292

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures