Sequence Similarity Clusters for the Entities in PDB 1L3E

Entity #1 | Chains: A
hypoxia inducible factor-1 alpha subunit protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 21372
95 % 4 4 19234
90 % 4 4 18713
70 % 4 4 17232
50 % 4 4 15023
40 % 4 4 13359
30 % 4 4 11231
Entity #2 | Chains: B
p300 protein protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37911
95 % 2 2 32177
90 % 7 7 11005
70 % 7 7 10401
50 % 7 7 9355
40 % 12 13 4651
30 % 12 13 4360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures