Sequence Similarity Clusters for the Entities in PDB 1L2W

Entity #1 | Chains: A,B,C,D,E,F,G,H
YopE regulator protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 4875
95 % 4 4 3898
90 % 4 4 3924
70 % 4 4 3854
50 % 4 4 3739
40 % 5 5 3163
30 % 5 5 2954
Entity #2 | Chains: I,J,K,L
Outer membrane virulence protein yopE protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22483
95 % 1 1 19208
90 % 1 1 18697
70 % 1 1 17256
50 % 1 1 15073
40 % 1 1 13463
30 % 1 1 11532

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.