Sequence Similarity Clusters for the Entities in PDB 1L2W

Entity #1 | Chains: A,B,C,D,E,F,G,H
YopE regulator protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5430
95 % 4 4 4272 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.1
PDBFlex
90 % 4 4 4302
70 % 4 4 4226
50 % 4 4 4064
40 % 5 5 3423
30 % 5 5 3199
Entity #2 | Chains: I,J,K,L
Outer membrane virulence protein yopE protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24674
95 % 1 1 21041 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 20456
70 % 1 1 18790
50 % 1 1 16318
40 % 1 1 14553
30 % 1 1 12452

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures