Sequence Similarity Clusters for the Entities in PDB 1L2W

Entity #1 | Chains: A,B,C,D,E,F,G,H
YopE regulator protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5199
95 % 4 4 4030 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.1
PDBFlex
90 % 4 4 4081
70 % 4 4 4010
50 % 4 4 3904
40 % 5 5 3367
30 % 5 5 3109
Entity #2 | Chains: I,J,K,L
Outer membrane virulence protein yopE protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19278
95 % 1 1 17590 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 17163
70 % 1 1 15904
50 % 1 1 13924
40 % 1 1 12447
30 % 1 1 10492

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures