Sequence Similarity Clusters for the Entities in PDB 1L2W

Entity #1 | Chains: A,B,C,D,E,F,G,H
YopE regulator protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 5021
95 % 4 4 3994
90 % 4 4 4019
70 % 4 4 3946
50 % 4 4 3825
40 % 5 5 3245
30 % 5 5 3028
Entity #2 | Chains: I,J,K,L
Outer membrane virulence protein yopE protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23071
95 % 1 1 19688
90 % 1 1 19157
70 % 1 1 17674
50 % 1 1 15419
40 % 1 1 13767
30 % 1 1 11788

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.