Sequence Similarity Clusters for the Entities in PDB 1L2W

Entity #1 | Chains: A,B,C,D,E,F,G,H
YopE regulator protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5304
95 % 4 4 4177 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.0
PDBFlex
90 % 4 4 4206
70 % 4 4 4143
50 % 4 4 3992
40 % 5 5 3372
30 % 5 5 3150
Entity #2 | Chains: I,J,K,L
Outer membrane virulence protein yopE protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24204
95 % 1 1 20679 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 1 1 20107
70 % 1 1 18469
50 % 1 1 16051
40 % 1 1 14324
30 % 1 1 12253

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.