Sequence Similarity Clusters for the Entities in PDB 1L2O

Entity #1 | Chains: A
MYOSIN HEAVY CHAIN protein, length: 835 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 14 3603
95 % 6 14 4393 Flexibility: High
Max RMSD: 28.4, Avg RMSD: 13.2
PDBFlex
90 % 6 17 3505
70 % 8 21 2819
50 % 15 50 457
40 % 60 101 296
30 % 82 133 220
Entity #2 | Chains: B
MYOSIN REGULATORY LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 18 2765
95 % 10 18 3420 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 10 18 3469
70 % 13 24 2210
50 % 16 47 528
40 % 192 349 43
30 % 212 376 51
Entity #3 | Chains: C
MYOSIN ESSENTIAL LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 17 2984
95 % 13 24 2162 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 13 24 2211
70 % 13 24 2213
50 % 15 28 1895
40 % 193 349 43
30 % 213 376 51

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures