Sequence Similarity Clusters for the Entities in PDB 1L2O

Entity #1 | Chains: A
MYOSIN HEAVY CHAIN protein, length: 835 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 14 3467
95 % 6 14 4248 Flexibility: High
Max RMSD: 27.4, Avg RMSD: 10.1
PDBFlex
90 % 6 17 3374
70 % 8 21 2717
50 % 15 50 446
40 % 60 101 284
30 % 82 126 238
Entity #2 | Chains: B
MYOSIN REGULATORY LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 18 2637
95 % 10 18 3293 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.2
PDBFlex
90 % 10 18 3338
70 % 13 24 2122
50 % 16 47 507
40 % 189 339 39
30 % 209 366 49
Entity #3 | Chains: C
MYOSIN ESSENTIAL LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 17 2859
95 % 13 24 2081 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 13 24 2130
70 % 13 24 2125
50 % 15 28 1824
40 % 190 339 39
30 % 210 366 49

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.