Sequence Similarity Clusters for the Entities in PDB 1L2G

Entity #1 | Chains: A,B,C,D
Glycoprotein D protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6818
95 % 4 6 5563 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 0.9
PDBFlex
90 % 4 6 5592
70 % 7 9 3749
50 % 7 9 3664
40 % 7 9 3498
30 % 7 9 3228

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures