Sequence Similarity Clusters for the Entities in PDB 1L2G

Entity #1 | Chains: A,B,C,D
Glycoprotein D protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6954
95 % 4 6 5682 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 0.9
PDBFlex
90 % 4 6 5703
70 % 7 9 3821
50 % 7 9 3728
40 % 7 9 3559
30 % 7 9 3263

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures