Sequence Similarity Clusters for the Entities in PDB 1L1O

Entity #1 | Chains: A,D
Replication protein A 14 kDa subunit protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14125
95 % 3 3 13393
90 % 3 3 13173
70 % 3 3 12386
50 % 3 3 11044
40 % 3 3 10007
30 % 3 3 8720
Entity #2 | Chains: B,E
Replication protein A 32 kDa subunit protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9813
95 % 4 4 9904 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 4 4 9788
70 % 4 4 9335
50 % 4 4 8445
40 % 4 4 7746
30 % 5 6 4759
Entity #3 | Chains: C,F
Replication protein A 70 kDa DNA-binding subunit protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43473
95 % 1 1 32883 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 31429
70 % 1 1 28034
50 % 1 1 23904
40 % 1 1 21026
30 % 1 1 17799

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures