Sequence Similarity Clusters for the Entities in PDB 1L1O

Entity #1 | Chains: A,D
Replication protein A 14 kDa subunit protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14345
95 % 3 3 13594
90 % 3 3 13368
70 % 3 3 12552
50 % 3 3 11191
40 % 3 3 10134
30 % 3 3 8832
Entity #2 | Chains: B,E
Replication protein A 32 kDa subunit protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9985
95 % 4 4 10051 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 4 4 9931
70 % 4 4 9461
50 % 4 4 8558
40 % 4 4 7842
30 % 5 6 4816
Entity #3 | Chains: C,F
Replication protein A 70 kDa DNA-binding subunit protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43996
95 % 1 1 33263 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 31778
70 % 1 1 28332
50 % 1 1 24146
40 % 1 1 21236
30 % 1 1 17981

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures