Sequence Similarity Clusters for the Entities in PDB 1L1O

Entity #1 | Chains: A,D
Replication protein A 14 kDa subunit protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15127
95 % 3 3 12632 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 3 3 12728
70 % 3 3 12964
50 % 3 3 11510
40 % 3 3 10334
30 % 3 3 8821
Entity #2 | Chains: B,E
Replication protein A 32 kDa subunit protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9628
95 % 4 4 9477 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 4 4 9365
70 % 4 4 8948
50 % 4 4 8165
40 % 4 4 7462
30 % 5 6 4561
Entity #3 | Chains: C,F
Replication protein A 70 kDa DNA-binding subunit protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43663
95 % 1 1 32488 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 31107
70 % 1 1 27849
50 % 1 1 23827
40 % 1 1 20975
30 % 1 1 16959

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures