Sequence Similarity Clusters for the Entities in PDB 1L1O

Entity #1 | Chains: A,D
Replication protein A 14 kDa subunit protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 13812
95 % 3 3 13130
90 % 3 3 12909
70 % 3 3 12143
50 % 3 3 10832
40 % 3 3 9824
30 % 3 3 8562
Entity #2 | Chains: B,E
Replication protein A 32 kDa subunit protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9590
95 % 4 4 9716 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 4 4 9604
70 % 4 4 9166
50 % 4 4 8292
40 % 4 4 7601
30 % 5 6 4672
Entity #3 | Chains: C,F
Replication protein A 70 kDa DNA-binding subunit protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42551
95 % 1 1 32235 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 30840
70 % 1 1 27544
50 % 1 1 23506
40 % 1 1 20680
30 % 1 1 17518

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.