Sequence Similarity Clusters for the Entities in PDB 1L0Y

Entity #1 | Chains: A,C
14.3.d T cell receptor beta chain protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7371
95 % 5 11 3214 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 9 21 1506
70 % 141 314 29
50 % 141 317 75
40 % 141 317 96
30 % 3167 5780 1
Entity #2 | Chains: B,D
Exotoxin type A protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21555
95 % 3 8 1782 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 8 1821
70 % 3 8 1844
50 % 40 57 506
40 % 42 60 490
30 % 64 89 339

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures