Sequence Similarity Clusters for the Entities in PDB 1L0L

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 24 1173
95 % 6 29 1240 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 6 30 1186
70 % 6 47 658
50 % 6 47 706
40 % 6 47 739
30 % 12 55 630
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 27 955
95 % 6 32 1103 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.6
PDBFlex
90 % 6 32 1125
70 % 6 46 680
50 % 6 46 723
40 % 6 46 753
30 % 6 46 748
Entity #11 | Chains: K
Ubiquinol-cytochrome C reductase complex 6.4 kDa protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5693
95 % 3 21 2069 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 3 22 1919
70 % 3 22 1942
50 % 3 22 1943
40 % 3 22 1941
30 % 3 22 1870
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 1174
95 % 6 30 1241 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 6 34 1103
70 % 6 48 659
50 % 6 48 707
40 % 6 48 740
30 % 6 48 735
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 1101
95 % 6 25 1496 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 6 29 1192
70 % 6 46 660
50 % 12 54 604
40 % 13 62 457
30 % 13 62 457
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 26 986
95 % 6 29 1251 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 6 29 1278
70 % 6 43 740
50 % 12 51 652
40 % 12 51 681
30 % 13 59 475
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 21 1584
95 % 6 24 1607
90 % 6 27 1498
70 % 6 41 829
50 % 12 49 700
40 % 13 57 495
30 % 13 57 497
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 22 1298
95 % 6 29 1172 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 6 32 1122
70 % 6 46 676
50 % 6 46 720
40 % 6 46 751
30 % 6 46 746
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 24 1157
95 % 6 29 1175 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 6 32 1124
70 % 6 32 1156
50 % 6 46 721
40 % 6 46 752
30 % 6 46 747
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 21 1553
95 % 6 24 1761 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 6 38 866
70 % 6 42 787
50 % 6 42 832
40 % 6 42 863
30 % 6 42 848
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 15 2505
95 % 5 16 2787 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.0
PDBFlex
90 % 5 17 2571
70 % 5 17 2553
50 % 5 19 2087
40 % 5 19 2079
30 % 5 19 1996

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.