Sequence Similarity Clusters for the Entities in PDB 1KZU

Entity #1 | Chains: A,D,G
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 3755
95 % 3 3 4546 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 3 3 4566
70 % 3 3 4475
50 % 3 4 3550
40 % 3 4 3426
30 % 3 4 3199
Entity #2 | Chains: B,E,H
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 3758
95 % 3 3 4551 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 3 4571
70 % 3 4 3652
50 % 3 4 3552
40 % 3 4 3428
30 % 3 4 3201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.