Sequence Similarity Clusters for the Entities in PDB 1KZU

Entity #1 | Chains: A,D,G
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4259
95 % 3 3 4606 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 3 3 4646
70 % 3 3 4534
50 % 3 4 3577
40 % 3 4 3421
30 % 3 4 3162
Entity #2 | Chains: B,E,H
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4260
95 % 3 3 4607 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 3 4647
70 % 3 4 3613
50 % 3 4 3527
40 % 3 4 3380
30 % 3 4 3130

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures