Sequence Similarity Clusters for the Entities in PDB 1KZU

Entity #1 | Chains: A,D,G
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 3855
95 % 3 3 4653 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 3 3 4673
70 % 3 3 4577
50 % 3 4 3635
40 % 3 4 3500
30 % 3 4 3269
Entity #2 | Chains: B,E,H
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 3859
95 % 3 3 4659 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 3 4679
70 % 3 4 3749
50 % 3 4 3637
40 % 3 4 3502
30 % 3 4 3271

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures