Sequence Similarity Clusters for the Entities in PDB 1KZU

Entity #1 | Chains: A,D,G
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4171
95 % 3 3 4512 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 3 3 4555
70 % 3 3 4442
50 % 3 4 3537
40 % 3 4 3379
30 % 3 4 3118
Entity #2 | Chains: B,E,H
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4172
95 % 3 3 4513 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 3 4556
70 % 3 4 3538
50 % 3 4 3461
40 % 3 4 3319
30 % 3 4 3069

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures