Sequence Similarity Clusters for the Entities in PDB 1KZU

Entity #1 | Chains: A,D,G
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4400
95 % 3 3 4752 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 3 3 4786
70 % 3 3 4661
50 % 3 4 3665
40 % 3 4 3500
30 % 3 4 3217
Entity #2 | Chains: B,E,H
LIGHT HARVESTING PROTEIN B-800/850 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4401
95 % 3 3 4753 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 3 4787
70 % 3 4 3710
50 % 3 4 3613
40 % 3 4 3459
30 % 3 4 3185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures