Sequence Similarity Clusters for the Entities in PDB 1KYO

Entity #1 | Chains: A,L
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6466
95 % 7 8 6502 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6478
70 % 7 8 6291
50 % 7 8 5879
40 % 7 8 5469
30 % 22 58 625
Entity #10 | Chains: J,U
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6405
95 % 7 8 6562 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 8 6537
70 % 34 39 1107
50 % 464 583 7
40 % 4346 5475 1
30 % 5404 6818 1
Entity #11 | Chains: K,V
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 6499
95 % 7 8 6561
90 % 7 8 6536
70 % 158 211 55
50 % 235 308 24
40 % 276 352 27
30 % 5405 6818 1
Entity #12 | Chains: W
CYTOCHROME C, ISO-1 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 43 706
95 % 50 69 437 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 0.9
PDBFlex
90 % 54 73 441
70 % 54 73 469
50 % 91 133 199
40 % 111 158 182
30 % 111 158 206
Entity #2 | Chains: B,M
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6347
95 % 7 8 6503 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 7 8 6479
70 % 7 8 6292
50 % 7 8 5880
40 % 7 8 5470
30 % 7 8 4830
Entity #3 | Chains: C,N
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 14289
95 % 7 8 6622 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6598
70 % 7 8 6415
50 % 22 57 591
40 % 27 65 462
30 % 27 65 469
Entity #4 | Chains: D,O
CYTOCHROME C1, HEME PROTEIN protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6348
95 % 7 8 6504 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6480
70 % 7 8 6293
50 % 22 54 624
40 % 26 61 497
30 % 26 61 494
Entity #5 | Chains: E,P
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6493
95 % 7 8 6648 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6621
70 % 7 8 6433
50 % 22 52 678
40 % 27 60 507
30 % 27 60 512
Entity #6 | Chains: F,Q
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 11346
95 % 5 6 10984 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 10831
70 % 5 6 10265
50 % 5 6 9272
40 % 5 6 8403
30 % 5 6 7269
Entity #7 | Chains: G,R
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6349
95 % 7 8 6505 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6481
70 % 7 8 6294
50 % 7 8 5881
40 % 7 8 5471
30 % 7 8 4831
Entity #8 | Chains: H,S
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6346
95 % 7 8 6621 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 7 8 6597
70 % 7 8 6413
50 % 7 8 5993
40 % 7 8 5561
30 % 7 8 4829
Entity #9 | Chains: I,T
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28502
95 % 4 5 13322 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 4 5 13098
70 % 4 5 11520
50 % 4 5 10304
40 % 4 5 9294
30 % 4 5 7956

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures