Sequence Similarity Clusters for the Entities in PDB 1KYO

Entity #1 | Chains: A,L
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6691
95 % 7 8 6714 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6706
70 % 7 8 6502
50 % 7 8 6057
40 % 7 8 5634
30 % 23 62 600
Entity #10 | Chains: J,U
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6626
95 % 7 8 6771 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 8 6759
70 % 58 76 543
50 % 484 613 6
40 % 4588 5834 1
30 % 5723 7269 1
Entity #11 | Chains: K,V
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6727
95 % 7 8 6770 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6758
70 % 158 215 66
50 % 238 319 21
40 % 279 363 27
30 % 5724 7269 1
Entity #12 | Chains: W
CYTOCHROME C, ISO-1 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 44 699
95 % 51 70 443 Flexibility: Medium
Max RMSD: 16.5, Avg RMSD: 3.3
PDBFlex
90 % 56 75 435
70 % 56 75 469
50 % 95 137 203
40 % 115 162 186
30 % 115 162 206
Entity #2 | Chains: B,M
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6565
95 % 7 8 6715 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 7 8 6707
70 % 7 8 6503
50 % 7 8 6058
40 % 7 8 5635
30 % 7 8 4959
Entity #3 | Chains: C,N
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 14843
95 % 7 8 6835 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6827
70 % 7 8 6627
50 % 23 61 559
40 % 28 69 454
30 % 28 69 463
Entity #4 | Chains: D,O
CYTOCHROME C1, HEME PROTEIN protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6566
95 % 7 8 6716 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6708
70 % 7 8 6504
50 % 22 54 643
40 % 26 61 513
30 % 26 61 509
Entity #5 | Chains: E,P
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6720
95 % 7 8 6864 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 8 6850
70 % 7 8 6646
50 % 23 53 692
40 % 28 61 520
30 % 28 61 518
Entity #6 | Chains: F,Q
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 11782
95 % 5 6 11386 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 11238
70 % 5 6 10611
50 % 5 6 9553
40 % 5 6 8654
30 % 5 6 7476
Entity #7 | Chains: G,R
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6567
95 % 7 8 6717 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6709
70 % 7 8 6505
50 % 7 8 6059
40 % 7 8 5636
30 % 7 8 4960
Entity #8 | Chains: H,S
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6564
95 % 7 8 6833 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 7 8 6826
70 % 7 8 6625
50 % 7 8 6171
40 % 7 8 5633
30 % 7 8 4958
Entity #9 | Chains: I,T
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29425
95 % 4 5 13798 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 5 13556
70 % 4 5 11891
50 % 4 5 10609
40 % 4 5 9563
30 % 4 5 8191

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures