Sequence Similarity Clusters for the Entities in PDB 1KYO

Entity #1 | Chains: A,L
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25416
95 % 7 8 6199 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6190
70 % 7 8 6054
50 % 7 8 5659
40 % 7 8 5310
30 % 22 58 594
Entity #10 | Chains: J,U
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5758
95 % 7 8 6419 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 8 6402
70 % 34 39 1091
50 % 452 566 7
40 % 726 916 5
30 % 807 1042 7
Entity #11 | Chains: K,V
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5786
95 % 7 8 6441 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6421
70 % 143 191 72
50 % 233 305 21
40 % 727 916 5
30 % 808 1042 7
Entity #12 | Chains: W
CYTOCHROME C, ISO-1 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 14 2080
95 % 49 68 394 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 0.9
PDBFlex
90 % 53 72 396
70 % 53 72 434
50 % 90 132 190
40 % 110 157 176
30 % 110 157 191
Entity #2 | Chains: B,M
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5576
95 % 7 8 6241 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 7 8 6225
70 % 7 8 6083
50 % 7 8 5692
40 % 7 8 5336
30 % 7 8 4792
Entity #3 | Chains: C,N
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 11620
95 % 7 8 6221
90 % 7 8 6210
70 % 7 8 6071
50 % 22 57 566
40 % 27 65 445
30 % 27 65 445
Entity #4 | Chains: D,O
CYTOCHROME C1, HEME PROTEIN protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5641
95 % 7 8 6303 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6286
70 % 7 8 6152
50 % 22 54 610
40 % 22 54 642
30 % 27 62 464
Entity #5 | Chains: E,P
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5703
95 % 7 8 6362 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6346
70 % 7 8 6202
50 % 22 52 657
40 % 27 60 487
30 % 27 60 484
Entity #6 | Chains: F,Q
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 10772
95 % 5 6 10778 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 6 10643
70 % 5 6 10113
50 % 5 6 9146
40 % 5 6 8370
30 % 5 6 7371
Entity #7 | Chains: G,R
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5760
95 % 7 8 6421 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 7 8 6404
70 % 7 8 6259
50 % 7 8 5842
40 % 7 8 5472
30 % 7 8 4914
Entity #8 | Chains: H,S
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5796
95 % 7 8 6450 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 7 8 6430
70 % 7 8 6284
50 % 7 8 5865
40 % 7 8 5491
30 % 7 8 4938
Entity #9 | Chains: I,T
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48432
95 % 4 5 13380 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 5 13174
70 % 4 5 12400
50 % 4 5 11061
40 % 4 5 10038
30 % 4 5 8749

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.