Sequence Similarity Clusters for the Entities in PDB 1KYO

Entity #1 | Chains: A,L
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25012
95 % 7 8 6126 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6117
70 % 7 8 5968
50 % 7 8 5577
40 % 7 8 5234
30 % 22 55 634
Entity #10 | Chains: J,U
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5694
95 % 7 8 6344 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 8 6328
70 % 34 39 1079
50 % 430 540 8
40 % 703 887 5
30 % 784 1013 7
Entity #11 | Chains: K,V
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5721
95 % 7 8 6364 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6346
70 % 143 188 71
50 % 232 302 22
40 % 704 887 5
30 % 785 1013 7
Entity #12 | Chains: W
CYTOCHROME C, ISO-1 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 14 2052
95 % 49 68 389 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.0
PDBFlex
90 % 53 72 393
70 % 53 72 431
50 % 89 131 188
40 % 109 156 177
30 % 109 156 190
Entity #2 | Chains: B,M
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5507
95 % 7 8 6166 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 7 8 6151
70 % 7 8 5997
50 % 7 8 5610
40 % 7 8 5260
30 % 7 8 4727
Entity #3 | Chains: C,N
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 11469
95 % 7 8 6146 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6136
70 % 7 8 5984
50 % 22 54 610
40 % 27 62 457
30 % 27 62 458
Entity #4 | Chains: D,O
CYTOCHROME C1, HEME PROTEIN protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5574
95 % 7 8 6229 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6211
70 % 7 8 6065
50 % 22 51 654
40 % 22 51 686
30 % 27 59 478
Entity #5 | Chains: E,P
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5636
95 % 7 8 6288 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6272
70 % 7 8 6115
50 % 22 49 721
40 % 27 57 498
30 % 27 57 499
Entity #6 | Chains: F,Q
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 10635
95 % 5 6 10628 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 10491
70 % 5 6 9940
50 % 5 6 8999
40 % 5 6 8243
30 % 5 6 7253
Entity #7 | Chains: G,R
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5695
95 % 7 8 6345 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 7 8 6329
70 % 7 8 6166
50 % 7 8 5759
40 % 7 8 5392
30 % 7 8 4847
Entity #8 | Chains: H,S
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5731
95 % 7 8 6373 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 7 8 6355
70 % 7 8 6187
50 % 7 8 5779
40 % 7 8 5408
30 % 7 8 4867
Entity #9 | Chains: I,T
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47814
95 % 4 5 13193 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 5 12986
70 % 4 5 12185
50 % 4 5 10875
40 % 4 5 9872
30 % 4 5 8599

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.