Sequence Similarity Clusters for the Entities in PDB 1KXV

Entity #1 | Chains: A,B
ALPHA-AMYLASE, PANCREATIC protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 7054
95 % 3 17 2678 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 3 17 2728
70 % 17 78 585
50 % 18 82 599
40 % 18 91 575
30 % 18 91 571
Entity #2 | Chains: C,D
CAMELID VHH DOMAIN CAB10 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46550
95 % 1 1 34828
90 % 1 1 33272
70 % 1 1 29596
50 % 75 583 7
40 % 106 936 5
30 % 117 1065 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1HX0 1 A ALPHA AMYLASE (PPA) 9823 3.2.1.1 | Details
2 1KXQ 1 A, B, C, D alpha-amylase, pancreatic 9823 3.2.1.1 | Details
3 1KXV 1 A, B ALPHA-AMYLASE, PANCREATIC 9823 3.2.1.1 | Details
4 3L2M 1 A Pancreatic alpha-amylase residues 16-511 9823 3.2.1.1 | Details
5 1DHK 1 A PORCINE PANCREATIC ALPHA-AMYLASE 9823 3.2.1.1 | Details
6 3L2L 1 A Pancreatic alpha-amylase residues 16-511 9823 3.2.1.1 | Details
7 1WO2 1 A Alpha-amylase, pancreatic 9823 3.2.1.1 | Details
8 1JFH 1 A ALPHA-AMYLASE COMPLEXED WITH METHYL 4,4'-DITHIO-ALPHA-MALTOTRIOSIDE 9823 3.2.1.1 | Details
9 1UA3 1 A Alpha-amylase, pancreatic 9823 3.2.1.1 | Details
10 1PPI 1 A ALPHA-AMYLASE 9823 3.2.1.1 | Details
11 1KXT 1 A, C, E ALPHA-AMYLASE, PANCREATIC 9823 3.2.1.1 | Details
12 1PIG 1 A ALPHA-AMYLASE 9823 3.2.1.1 | Details
13 1PIF 1 A ALPHA-AMYLASE 9823 3.2.1.1 | Details
14 1OSE 1 A PORCINE ALPHA-AMYLASE 9823 3.2.1.1 | Details
15 1BVN 1 P PROTEIN (ALPHA-AMYLASE) 9823 3.2.1.1 | Details
16 4X0N 1 A Pancreatic alpha-amylase UNP residues 16-511 9823 3.2.1.1 | Details
17 1VAH 1 A Alpha-amylase, pancreatic 9823 3.2.1.1 | Details