Sequence Similarity Clusters for the Entities in PDB 1KXV

Entity #1 | Chains: A,B
ALPHA-AMYLASE, PANCREATIC protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 2514
95 % 3 17 2804 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.5
PDBFlex
90 % 3 17 2865
70 % 17 79 591
50 % 18 83 605
40 % 18 92 591
30 % 18 92 588
Entity #2 | Chains: C,D
CAMELID VHH DOMAIN CAB10 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30457
95 % 1 1 26529 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 25581
70 % 1 1 29851
50 % 79 617 6
40 % 367 5883 1
30 % 444 7321 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1HX0 1 A ALPHA AMYLASE (PPA) 9823 3.2.1.1 | Details
2 1KXQ 1 A, B, C, D alpha-amylase, pancreatic 9823 3.2.1.1 | Details
3 1KXV 1 A, B ALPHA-AMYLASE, PANCREATIC 9823 3.2.1.1 | Details
4 3L2M 1 A Pancreatic alpha-amylase residues 16-511 9823 3.2.1.1 | Details
5 1DHK 1 A PORCINE PANCREATIC ALPHA-AMYLASE 9823 3.2.1.1 | Details
6 3L2L 1 A Pancreatic alpha-amylase residues 16-511 9823 3.2.1.1 | Details
7 1WO2 1 A Alpha-amylase, pancreatic 9823 3.2.1.1 | Details
8 1JFH 1 A ALPHA-AMYLASE COMPLEXED WITH METHYL 4,4'-DITHIO-ALPHA-MALTOTRIOSIDE 9823 3.2.1.1 | Details
9 1UA3 1 A Alpha-amylase, pancreatic 9823 3.2.1.1 | Details
10 1PPI 1 A ALPHA-AMYLASE 9823 3.2.1.1 | Details
11 1KXT 1 A, C, E ALPHA-AMYLASE, PANCREATIC 9823 3.2.1.1 | Details
12 1PIG 1 A ALPHA-AMYLASE 9823 3.2.1.1 | Details
13 1PIF 1 A ALPHA-AMYLASE 9823 3.2.1.1 | Details
14 1OSE 1 A PORCINE ALPHA-AMYLASE 9823 3.2.1.1 | Details
15 1BVN 1 P PROTEIN (ALPHA-AMYLASE) 9823 3.2.1.1 | Details
16 4X0N 1 A Pancreatic alpha-amylase UNP residues 16-511 9823 3.2.1.1 | Details
17 1VAH 1 A Alpha-amylase, pancreatic 9823 3.2.1.1 | Details