Sequence Similarity Clusters for the Entities in PDB 1KXV

Entity #1 | Chains: A,B
ALPHA-AMYLASE, PANCREATIC protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 7220
95 % 3 17 2744 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 3 17 2793
70 % 17 79 583
50 % 18 83 596
40 % 18 92 572
30 % 18 92 567
Entity #2 | Chains: C,D
CAMELID VHH DOMAIN CAB10 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47495
95 % 1 1 35488
90 % 1 1 33881
70 % 1 1 30121
50 % 76 603 7
40 % 107 963 5
30 % 118 1093 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KXQ 1 A, B, C, D alpha-amylase, pancreatic 9823 3.2.1.1 | Details
2 1KXV 1 A, B ALPHA-AMYLASE, PANCREATIC 9823 3.2.1.1 | Details
3 1KXT 1 A, C, E ALPHA-AMYLASE, PANCREATIC 9823 3.2.1.1 | Details