Sequence Similarity Clusters for the Entities in PDB 1KXT

Entity #1 | Chains: A,C,E
ALPHA-AMYLASE, PANCREATIC protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6722
95 % 11 17 2546 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.5
PDBFlex
90 % 11 17 2594
70 % 61 77 563
50 % 63 81 574
40 % 68 90 552
30 % 68 90 553
Entity #2 | Chains: B,D,F
IMMUNOGLOBULIN VHH FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28167
95 % 1 1 23359 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 22610
70 % 131 348 9
50 % 187 536 8
40 % 313 882 5
30 % 356 1008 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.