Sequence Similarity Clusters for the Entities in PDB 1KXT

Entity #1 | Chains: A,C,E
ALPHA-AMYLASE, PANCREATIC protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 2498
95 % 11 17 2784 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.5
PDBFlex
90 % 11 17 2846
70 % 62 79 589
50 % 64 83 604
40 % 69 92 590
30 % 69 92 587
Entity #2 | Chains: B,D,F
IMMUNOGLOBULIN VHH FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25430
95 % 1 1 22445 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 21739
70 % 150 411 9
50 % 213 613 6
40 % 1486 5834 1
30 % 1821 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures