Sequence Similarity Clusters for the Entities in PDB 1KXT

Entity #1 | Chains: A,C,E
ALPHA-AMYLASE, PANCREATIC protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7093
95 % 11 17 2700 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 11 17 2748
70 % 62 78 587
50 % 64 82 600
40 % 69 91 577
30 % 69 91 572
Entity #2 | Chains: B,D,F
IMMUNOGLOBULIN VHH FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29705
95 % 1 1 24610 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 23784
70 % 145 394 9
50 % 205 591 7
40 % 333 945 5
30 % 377 1074 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures