Sequence Similarity Clusters for the Entities in PDB 1KXT

Entity #1 | Chains: A,C,E
ALPHA-AMYLASE, PANCREATIC protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6946
95 % 11 17 2629 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 11 17 2676
70 % 61 77 588
50 % 63 81 597
40 % 68 90 570
30 % 68 90 570
Entity #2 | Chains: B,D,F
IMMUNOGLOBULIN VHH FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29103
95 % 1 1 24141 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 23355
70 % 141 379 9
50 % 201 576 7
40 % 329 929 5
30 % 373 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.