Sequence Similarity Clusters for the Entities in PDB 1KXQ

Entity #1 | Chains: A,B,C,D
alpha-amylase, pancreatic protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 6972
95 % 2 17 2651 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 17 2699
70 % 16 78 577
50 % 17 82 591
40 % 17 91 564
30 % 17 91 561
Entity #2 | Chains: E,F,G,H
antibody VHH fragment CABAMD9 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23585
95 % 1 1 20185 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 19638
70 % 56 381 9
50 % 66 578 7
40 % 95 931 5
30 % 106 1059 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.