Sequence Similarity Clusters for the Entities in PDB 1KXQ

Entity #1 | Chains: A,B,C,D
alpha-amylase, pancreatic protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 6879
95 % 2 17 2607 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.5
PDBFlex
90 % 2 17 2653
70 % 15 77 580
50 % 16 81 591
40 % 16 90 565
30 % 16 90 565
Entity #2 | Chains: E,F,G,H
antibody VHH fragment CABAMD9 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23336
95 % 1 1 19989 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 19443
70 % 53 372 9
50 % 63 566 7
40 % 92 916 5
30 % 102 1042 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.