Sequence Similarity Clusters for the Entities in PDB 1KXQ

Entity #1 | Chains: A,B,C,D
alpha-amylase, pancreatic protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 7093
95 % 2 17 2700 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 17 2748
70 % 16 78 587
50 % 17 82 600
40 % 17 91 577
30 % 17 91 572
Entity #2 | Chains: E,F,G,H
antibody VHH fragment CABAMD9 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24032
95 % 1 1 20527 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 19954
70 % 56 394 9
50 % 66 591 7
40 % 95 945 5
30 % 106 1074 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures