Sequence Similarity Clusters for the Entities in PDB 1KXQ

Entity #1 | Chains: A,B,C,D
alpha-amylase, pancreatic protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 17 2484
95 % 2 17 2768 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 17 2829
70 % 16 79 588
50 % 17 83 600
40 % 17 92 587
30 % 17 92 588
Entity #2 | Chains: E,F,G,H
antibody VHH fragment CABAMD9 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24168
95 % 1 1 21444 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 20810
70 % 58 409 9
50 % 69 609 6
40 % 313 5750 1
30 % 386 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures