Sequence Similarity Clusters for the Entities in PDB 1KXP

Entity #1 | Chains: A
ACTIN,ALPHA SKELETAL MUSCLE protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 137 8
95 % 60 197 9 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 62 203 10
70 % 64 208 13
50 % 64 215 15
40 % 65 234 24
30 % 66 254 42
Entity #2 | Chains: D
HUMAN VITAMIN D-BINDING PROTEIN protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26454
95 % 1 6 7807 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 1 6 7752
70 % 1 6 7537
50 % 1 6 6942
40 % 1 6 6464
30 % 1 6 5790

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures