Sequence Similarity Clusters for the Entities in PDB 1KXP

Entity #1 | Chains: A
ACTIN,ALPHA SKELETAL MUSCLE protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 137 8
95 % 60 197 8 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 62 202 10
70 % 64 207 11
50 % 64 214 15
40 % 65 233 23
30 % 66 253 36
Entity #2 | Chains: D
HUMAN VITAMIN D-BINDING PROTEIN protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26055
95 % 1 6 7682 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 1 6 7630
70 % 1 6 7424
50 % 1 6 6837
40 % 1 6 6370
30 % 1 6 5700

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures