Sequence Similarity Clusters for the Entities in PDB 1KXP

Entity #1 | Chains: A
ACTIN,ALPHA SKELETAL MUSCLE protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 124 21
95 % 60 181 14 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 62 186 14
70 % 64 191 20
50 % 64 194 27
40 % 65 213 36
30 % 66 233 51
Entity #2 | Chains: D
HUMAN VITAMIN D-BINDING PROTEIN protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25609
95 % 1 6 7570 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 1 6 7518
70 % 1 6 7324
50 % 1 6 6744
40 % 1 6 6283
30 % 1 6 5620

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures