Sequence Similarity Clusters for the Entities in PDB 1KXA

Entity #1 | Chains: A
SINDBIS VIRUS CAPSID PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 4587
95 % 8 11 3452 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 8 11 3512
70 % 12 15 2715
50 % 17 24 1115
40 % 17 24 1129
30 % 17 24 1109

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures