Sequence Similarity Clusters for the Entities in PDB 1KVD

Entity #1 | Chains: A,C
SMK TOXIN protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23190
95 % 2 2 18063 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 17620
70 % 2 2 15091
50 % 2 2 13261
40 % 2 2 11884
30 % 2 2 10060
Entity #2 | Chains: B,D
SMK TOXIN protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19902
95 % 2 2 18064 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 17621
70 % 2 2 16303
50 % 2 2 14245
40 % 2 2 12714
30 % 2 2 10718

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures