Sequence Similarity Clusters for the Entities in PDB 1KVD

Entity #1 | Chains: A,C
SMK TOXIN protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24831
95 % 2 2 21172 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20572
70 % 2 2 18895
50 % 2 2 16416
40 % 2 2 14640
30 % 2 2 12532
Entity #2 | Chains: B,D
SMK TOXIN protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24673
95 % 2 2 21035 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20441
70 % 2 2 18775
50 % 2 2 16296
40 % 2 2 14533
30 % 2 2 12436

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures