Sequence Similarity Clusters for the Entities in PDB 1KU8

Entity #1 | Chains: A,C,E,G
JACALIN ALPHA CHAIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 21 476
95 % 13 31 392 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 14 32 384
70 % 15 36 384
50 % 19 49 274
40 % 19 49 289
30 % 38 93 199
Entity #2 | Chains: B,D,F,H
JACALIN BETA CHAIN protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures