Sequence Similarity Clusters for the Entities in PDB 1KU8

Entity #1 | Chains: A,C,E,G
JACALIN ALPHA CHAIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 21 463
95 % 13 31 359 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 14 32 366
70 % 15 36 373
50 % 19 49 265
40 % 19 49 280
30 % 38 93 195
Entity #2 | Chains: B,D,F,H
JACALIN BETA CHAIN protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.