Sequence Similarity Clusters for the Entities in PDB 1KU7

Entity #1 | Chains: B
5'-D(*CP*CP*TP*TP*GP*AP*CP*AP*AP*AP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*CP*CP*TP*TP*TP*GP*TP*CP*AP*AP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,D
sigma factor sigA protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29848
95 % 3 3 20765 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.5
PDBFlex
90 % 3 4 13202
70 % 3 4 12416
50 % 4 7 7142
40 % 4 7 6637
30 % 4 7 5919

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.