Sequence Similarity Clusters for the Entities in PDB 1KU7

Entity #1 | Chains: B
5'-D(*CP*CP*TP*TP*GP*AP*CP*AP*AP*AP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*CP*CP*TP*TP*TP*GP*TP*CP*AP*AP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,D
sigma factor sigA protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 30296
95 % 3 3 21076
90 % 3 4 13393
70 % 3 4 12598
50 % 4 7 7243
40 % 4 7 6733
30 % 4 7 6001

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures