Sequence Similarity Clusters for the Entities in PDB 1KTS

Entity #1 | Chains: A
thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 287 333 44
95 % 288 334 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 288 334 64
70 % 289 336 77
50 % 289 336 100
40 % 289 336 124
30 % 289 336 136
Entity #2 | Chains: B
thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 249 288 55
95 % 320 372 36 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 324 379 38
70 % 336 403 45
50 % 336 403 78
40 % 1449 1679 4
30 % 1565 1827 6
Entity #3 | Chains: C
hirudin IIB protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.