Sequence Similarity Clusters for the Entities in PDB 1KTR

Entity #1 | Chains: L
Anti-his tag antibody 3d5 variable light chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70152
95 % 1 5 11153 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 13 3521
70 % 12 20 1966
50 % 193 312 23
40 % 600 956 5
30 % 670 1085 7
Entity #2 | Chains: M
Peptide linker protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77485
95 % 1 1 54082
90 % 1 1 51230
70 % 1 1 44821
50 % 1 1 38270
40 % 1 1 33796
30 % 1 1 28735
Entity #3 | Chains: H
Anti-his tag antibody 3d5 variable heavy chain protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70339
95 % 1 1 48395
90 % 1 2 20036
70 % 42 86 268
50 % 376 599 6
40 % 601 956 5
30 % 671 1085 7
Entity #4 | Chains: P
Oligohistidine peptide Antigen protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures