Sequence Similarity Clusters for the Entities in PDB 1KTR

Entity #1 | Chains: L
Anti-his tag antibody 3d5 variable light chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68059
95 % 1 5 10758 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 13 3385
70 % 12 20 1873
50 % 194 308 21
40 % 589 929 5
30 % 658 1056 7
Entity #2 | Chains: M
Peptide linker protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75228
95 % 1 1 52611
90 % 1 1 49903
70 % 1 1 43698
50 % 1 1 37335
40 % 1 1 32979
30 % 1 1 28048
Entity #3 | Chains: H
Anti-his tag antibody 3d5 variable heavy chain protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68243
95 % 1 1 47044
90 % 1 2 19391
70 % 43 85 259
50 % 364 576 7
40 % 590 929 5
30 % 659 1056 7
Entity #4 | Chains: P
Oligohistidine peptide Antigen protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.