Sequence Similarity Clusters for the Entities in PDB 1KTR

Entity #1 | Chains: L
Anti-his tag antibody 3d5 variable light chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69278
95 % 1 5 10954 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 13 3468
70 % 12 20 1931
50 % 194 309 23
40 % 600 945 5
30 % 670 1074 7
Entity #2 | Chains: M
Peptide linker protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76531
95 % 1 1 53440
90 % 1 1 50644
70 % 1 1 44318
50 % 1 1 37847
40 % 1 1 33413
30 % 1 1 28405
Entity #3 | Chains: H
Anti-his tag antibody 3d5 variable heavy chain protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69465
95 % 1 1 47826
90 % 1 2 19754
70 % 43 85 266
50 % 375 591 7
40 % 601 945 5
30 % 671 1074 7
Entity #4 | Chains: P
Oligohistidine peptide Antigen protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures