Sequence Similarity Clusters for the Entities in PDB 1KTP

Entity #1 | Chains: A
C-PHYCOCYANIN ALPHA SUBUNIT protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 7344
95 % 5 18 3595 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 5 18 3647
70 % 8 36 282
50 % 8 42 283
40 % 11 54 58
30 % 26 143 17
Entity #2 | Chains: B
C-PHYCOCYANIN BETA SUBUNIT protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 18 2881
95 % 5 18 3580 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 18 3632
70 % 8 39 281
50 % 16 62 38
40 % 16 87 24
30 % 27 143 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.