Sequence Similarity Clusters for the Entities in PDB 1KTK

Entity #1 | Chains: A,B,C,D
Exotoxin type C protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14622
95 % 3 3 13700 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 3 3 13460
70 % 3 3 12616
50 % 3 3 11216
40 % 5 5 5356
30 % 90 90 355
Entity #2 | Chains: E,F
T-cell receptor beta chain protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34427
95 % 10 10 4984 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 2.6
PDBFlex
90 % 10 10 4911
70 % 341 344 25
50 % 344 347 71
40 % 344 347 92
30 % 6626 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures