Sequence Similarity Clusters for the Entities in PDB 1KTD

Entity #1 | Chains: A,C
H-2 class II histocompatibility antigen, E-D alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12937
95 % 4 15 1720
90 % 42 97 232
70 % 42 97 264
50 % 56 149 176
40 % 56 149 189
30 % 113 310 94
Entity #2 | Chains: B,D
Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 1747
95 % 4 15 1711
90 % 4 15 1746
70 % 54 140 161
50 % 56 149 175
40 % 56 149 188
30 % 114 310 94

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.