Sequence Similarity Clusters for the Entities in PDB 1KTD

Entity #1 | Chains: A,C
H-2 class II histocompatibility antigen, E-D alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12518
95 % 4 15 1649
90 % 40 94 229
70 % 40 94 264
50 % 54 146 173
40 % 54 146 187
30 % 109 304 83
Entity #2 | Chains: B,D
Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 1672
95 % 4 15 1639
90 % 4 15 1671
70 % 52 137 163
50 % 54 146 172
40 % 54 146 186
30 % 110 304 83

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.