Sequence Similarity Clusters for the Entities in PDB 1KTD

Entity #1 | Chains: A,C
H-2 class II histocompatibility antigen, E-D alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13429
95 % 4 15 1788 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 49 105 231
70 % 49 105 263
50 % 67 161 179
40 % 67 161 194
30 % 135 334 83
Entity #2 | Chains: B,D
Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 1826
95 % 4 15 1778 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 4 15 1818
70 % 65 152 159
50 % 67 161 178
40 % 67 161 193
30 % 136 334 83

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures