Sequence Similarity Clusters for the Entities in PDB 1KT2

Entity #1 | Chains: A,C
H-2 class II histocompatibility antigen, E-D alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 2290
95 % 11 15 1835 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 81 105 235
70 % 81 105 266
50 % 118 161 184
40 % 118 161 195
30 % 241 334 98
Entity #2 | Chains: B,D
Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 1868
95 % 11 15 1826 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 11 15 1866
70 % 113 152 161
50 % 118 161 183
40 % 118 161 194
30 % 242 334 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures