Sequence Similarity Clusters for the Entities in PDB 1KSY

Entity #1 | Chains: D,E
E1 Recognition Sequence, Strand 1 dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
E1 Recognition Sequence, Strand 2 dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C
REPLICATION PROTEIN E1 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 4497
95 % 2 3 5293 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.5
PDBFlex
90 % 2 3 5312
70 % 2 3 5213
50 % 2 3 4983
40 % 2 3 4714
30 % 3 4 4063

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures