Sequence Similarity Clusters for the Entities in PDB 1KSY

Entity #1 | Chains: D,E
E1 Recognition Sequence, Strand 1 dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
E1 Recognition Sequence, Strand 2 dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C
REPLICATION PROTEIN E1 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 4410
95 % 2 3 5195 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.5
PDBFlex
90 % 2 3 5218
70 % 2 3 5126
50 % 2 3 4903
40 % 2 3 4643
30 % 3 4 4006

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.