Sequence Similarity Clusters for the Entities in PDB 1KSY

Entity #1 | Chains: D,E
E1 Recognition Sequence, Strand 1 dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
E1 Recognition Sequence, Strand 2 dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C
REPLICATION PROTEIN E1 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 5189
95 % 2 3 5513 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.5
PDBFlex
90 % 2 3 5547
70 % 2 3 5434
50 % 2 3 5171
40 % 2 3 4852
30 % 3 4 3928

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures