Sequence Similarity Clusters for the Entities in PDB 1KSX

Entity #1 | Chains: C,G,K,O
E1 Recognition Sequence dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,E,F,I,J,M,N
REPLICATION PROTEIN E1 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4243
95 % 3 3 5018 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 5033
70 % 3 3 4969
50 % 3 3 4760
40 % 3 3 4507
30 % 4 4 3891

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.