Sequence Similarity Clusters for the Entities in PDB 1KSX

Entity #1 | Chains: C,G,K,O
E1 Recognition Sequence dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,E,F,I,J,M,N
REPLICATION PROTEIN E1 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4416
95 % 3 3 5201 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 5221
70 % 3 3 5129
50 % 3 3 4906
40 % 3 3 4646
30 % 4 4 4010

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures