Sequence Similarity Clusters for the Entities in PDB 1KSJ

Entity #1 | Chains: A
arf-like protein 2 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27488
95 % 4 6 10314 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.1
PDBFlex
90 % 4 6 10182
70 % 4 6 9649
50 % 11 14 3406
40 % 48 80 293
30 % 550 768 16
Entity #2 | Chains: B
RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 20 1686
95 % 21 21 2057 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 21 21 2109
70 % 21 21 2109
50 % 21 21 2098
40 % 21 21 2085
30 % 21 21 2007

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.