Sequence Similarity Clusters for the Entities in PDB 1KSJ

Entity #1 | Chains: A
arf-like protein 2 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28323
95 % 4 6 10611 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.1
PDBFlex
90 % 4 6 10466
70 % 4 6 9933
50 % 11 14 3493
40 % 48 80 306
30 % 574 797 16
Entity #2 | Chains: B
RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 22 1600
95 % 24 24 1812 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 24 24 1849
70 % 24 24 1877
50 % 24 24 1906
40 % 24 24 1909
30 % 24 24 1841

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures