Sequence Similarity Clusters for the Entities in PDB 1KSJ

Entity #1 | Chains: A
arf-like protein 2 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27137
95 % 4 6 10946 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.1
PDBFlex
90 % 4 6 10788
70 % 4 6 10198
50 % 11 14 3457
40 % 48 80 336
30 % 614 842 13
Entity #2 | Chains: B
RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 19 2154
95 % 24 24 1902 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 24 24 1946
70 % 24 24 1963
50 % 24 24 1986
40 % 24 24 1969
30 % 24 24 1880

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures